File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3498ms, 86.41% of 4048ms total Dropped 469 nodes (cum <= 20.24ms) flat flat% sum% cum cum% 0 0% 0% 4041ms 99.83% __libc_start_call_main 0 0% 0% 4041ms 99.83% __libc_start_main_impl 0 0% 0% 4041ms 99.83% _start 0 0% 0% 4038ms 99.75% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4038ms 99.75% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4038ms 99.75% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4038ms 99.75% main 0 0% 0% 4000ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4000ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4000ms 98.81% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 3992ms 98.62% AbstractCardiacProblem::Solve 1ms 0.025% 0.025% 3978ms 98.27% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.025% 1987ms 49.09% LinearSystem::Solve 0 0% 0.025% 1939ms 47.90% KSPSolve 8ms 0.2% 0.22% 1939ms 47.90% KSPSolve_Private 1ms 0.025% 0.25% 1888ms 46.64% KSPSolve_CG 15ms 0.37% 0.62% 1685ms 41.63% AbstractCardiacTissue::SolveCellSystems 1ms 0.025% 0.64% 1193ms 29.47% PCApply 0 0% 0.64% 1183ms 29.22% PCApply_BJacobi_Singleblock 58ms 1.43% 2.08% 1078ms 26.63% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 2.08% 986ms 24.36% KSPSolve_PREONLY (partial-inline) 217ms 5.36% 7.44% 943ms 23.30% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 1ms 0.025% 7.46% 937ms 23.15% KSP_PCApply.lto_priv.7 1ms 0.025% 7.49% 927ms 22.90% PCApply_ICC 4ms 0.099% 7.58% 926ms 22.88% MatSolve 907ms 22.41% 29.99% 910ms 22.48% MatSolve_SeqSBAIJ_1_NaturalOrdering 6ms 0.15% 30.14% 563ms 13.91% MatMult 4ms 0.099% 30.24% 552ms 13.64% MatMult_SeqAIJ 540ms 13.34% 43.58% 552ms 13.64% MatMult_SeqAIJ_Inode (inline) 17ms 0.42% 44.00% 548ms 13.54% AbstractCardiacTissue::UpdateCaches (inline) 170ms 4.20% 48.20% 514ms 12.70% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 52ms 1.28% 49.48% 425ms 10.50% CardiacNewtonSolver::Solve 2ms 0.049% 49.53% 355ms 8.77% KSPConvergedDefault 0 0% 49.53% 355ms 8.77% KSP_PCApply (partial-inline) 43ms 1.06% 50.59% 271ms 6.69% BidomainSolver::SetupLinearSystem 142ms 3.51% 54.10% 248ms 6.13% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 16ms 0.4% 54.50% 216ms 5.34% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 29ms 0.72% 55.21% 211ms 5.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 55.21% 197ms 4.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 45ms 1.11% 56.32% 197ms 4.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 173ms 4.27% 60.60% 173ms 4.27% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3ms 0.074% 60.67% 154ms 3.80% MatNullSpaceRemove 3ms 0.074% 60.75% 152ms 3.75% std::pow (inline) 22ms 0.54% 61.29% 149ms 3.68% __pow 128ms 3.16% 64.45% 131ms 3.24% __ieee754_log_fma 130ms 3.21% 67.66% 130ms 3.21% ddot_ 62ms 1.53% 69.19% 128ms 3.16% __GI___exp 14ms 0.35% 69.54% 127ms 3.14% __ieee754_pow_fma 0 0% 69.54% 115ms 2.84% VecDuplicate 0 0% 69.54% 103ms 2.54% boost::numeric::ublas::norm_inf (inline) 67ms 1.66% 71.20% 103ms 2.54% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.20% 103ms 2.54% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.20% 103ms 2.54% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 0 0% 71.20% 98ms 2.42% VecMDot 8ms 0.2% 71.39% 98ms 2.42% VecMXDot_Private 2ms 0.049% 71.44% 92ms 2.27% VecTDot 20ms 0.49% 71.94% 87ms 2.15% MPI_Wtime 0 0% 71.94% 83ms 2.05% VecTDot_Seq 0 0% 71.94% 83ms 2.05% VecXDot_Seq_Private.constprop.0 75ms 1.85% 73.79% 82ms 2.03% exp_inline (inline) 2ms 0.049% 73.84% 77ms 1.90% VecNorm 46ms 1.14% 74.98% 75ms 1.85% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2ms 0.049% 75.02% 73ms 1.80% VecDuplicate_Seq 2ms 0.049% 75.07% 67ms 1.66% __GI___clock_gettime 0 0% 75.07% 65ms 1.61% VecNorm_Seq 65ms 1.61% 76.68% 65ms 1.61% [[vdso]] 64ms 1.58% 78.26% 64ms 1.58% VecMDot_Seq 58ms 1.43% 79.69% 63ms 1.56% __ieee754_exp_fma 12ms 0.3% 79.99% 62ms 1.53% PetscLogEventBeginDefault 14ms 0.35% 80.34% 61ms 1.51% PetscLogEventEndDefault 0 0% 80.34% 58ms 1.43% KSP_RemoveNullSpace (inline) 4ms 0.099% 80.43% 55ms 1.36% PetscMallocA 5ms 0.12% 80.56% 53ms 1.31% VecMAXPY 0 0% 80.56% 52ms 1.28% VecDestroy 6ms 0.15% 80.71% 51ms 1.26% PetscMallocAlign (partial-inline) 3ms 0.074% 80.78% 46ms 1.14% VecCreate 1ms 0.025% 80.81% 42ms 1.04% VecDuplicate_MPI 0 0% 80.81% 36ms 0.89% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 80.81% 36ms 0.89% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 80.81% 36ms 0.89% boost_numeric_ublas_abs (inline) 36ms 0.89% 81.69% 36ms 0.89% std::abs (inline) 0 0% 81.69% 33ms 0.82% CxxTest::RealWorldDescription::setUp 0 0% 81.69% 33ms 0.82% PMPI_Init_thread 0 0% 81.69% 33ms 0.82% PetscInitialize 0 0% 81.69% 33ms 0.82% PetscSetup::setUpWorld 0 0% 81.69% 33ms 0.82% PetscSetupUtils::CommonSetup 0 0% 81.69% 33ms 0.82% PetscSetupUtils::InitialisePetsc 3ms 0.074% 81.77% 33ms 0.82% VecSetType 0 0% 81.77% 33ms 0.82% ompi_mpi_init 3ms 0.074% 81.84% 32ms 0.79% __posix_memalign 0 0% 81.84% 31ms 0.77% VecNorm_MPI 0 0% 81.84% 31ms 0.77% VecNorm_MPI_Default.constprop.0 30ms 0.74% 82.58% 30ms 0.74% [libchaste_heart.so] 4ms 0.099% 82.68% 30ms 0.74% __GI___libc_malloc 29ms 0.72% 83.40% 29ms 0.72% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1ms 0.025% 83.42% 29ms 0.72% VecAYPX 27ms 0.67% 84.09% 29ms 0.72% VecMAXPY_Seq 12ms 0.3% 84.39% 28ms 0.69% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 84.39% 28ms 0.69% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.025% 84.41% 28ms 0.69% VecCreate_MPI_Private 28ms 0.69% 85.10% 28ms 0.69% log_inline (inline) 1ms 0.025% 85.13% 27ms 0.67% VecCopy 2ms 0.049% 85.18% 25ms 0.62% 0 0% 85.18% 23ms 0.57% PetscMemzero (inline) 0 0% 85.18% 23ms 0.57% orte_init 21ms 0.52% 85.70% 22ms 0.54% VecAYPX_Seq 22ms 0.54% 86.24% 22ms 0.54% __memset_avx2_unaligned_erms 0 0% 86.24% 21ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 6ms 0.15% 86.39% 21ms 0.52% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 1ms 0.025% 86.41% 21ms 0.52% PetscHeaderCreate_Private