File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108610ms, 91.21% of 119081ms total Dropped 1123 nodes (cum <= 595.40ms) flat flat% sum% cum cum% 0 0% 0% 119068ms 100% __libc_start_call_main 0 0% 0% 119068ms 100% __libc_start_main_impl 0 0% 0% 119068ms 100% _start 0 0% 0% 119065ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119065ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119065ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119065ms 100% main 0 0% 0% 119029ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119029ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119029ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119029ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119029ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119029ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 1ms 0.00084% 0.00084% 117776ms 98.90% AbstractCardiacProblem::Solve 6ms 0.005% 0.0059% 117009ms 98.26% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0034% 0.0092% 65708ms 55.18% LinearSystem::Solve 2ms 0.0017% 0.011% 65237ms 54.78% KSPSolve 12ms 0.01% 0.021% 65235ms 54.78% KSPSolve_Private 9ms 0.0076% 0.029% 64825ms 54.44% KSPSolve_SYMMLQ 219ms 0.18% 0.21% 42526ms 35.71% AbstractCardiacTissue::SolveCellSystems 7ms 0.0059% 0.22% 36781ms 30.89% PCApply 3ms 0.0025% 0.22% 36766ms 30.87% PCApply_BJacobi_Singleblock 0 0% 0.22% 34210ms 28.73% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 33098ms 27.79% PCApply_ICC 3ms 0.0025% 0.23% 33096ms 27.79% MatSolve 32580ms 27.36% 27.58% 33093ms 27.79% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1498ms 1.26% 28.84% 32824ms 27.56% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0034% 28.85% 31635ms 26.57% KSP_PCApply.lto_priv.18 6998ms 5.88% 34.72% 28288ms 23.76% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 10ms 0.0084% 34.73% 22163ms 18.61% MatMult 10ms 0.0084% 34.74% 22153ms 18.60% MatMult_SeqAIJ 21649ms 18.18% 52.92% 22150ms 18.60% MatMult_SeqAIJ_Inode (inline) 1976ms 1.66% 54.58% 14635ms 12.29% CardiacNewtonSolver::Solve 341ms 0.29% 54.87% 8840ms 7.42% AbstractCardiacTissue::UpdateCaches (inline) 4412ms 3.71% 58.57% 8603ms 7.22% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1882ms 1.58% 60.15% 8304ms 6.97% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1065ms 0.89% 61.05% 7737ms 6.50% BidomainSolver::SetupLinearSystem 1243ms 1.04% 62.09% 7415ms 6.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 62.09% 7105ms 5.97% KSP_PCApply (partial-inline) 5ms 0.0042% 62.09% 6523ms 5.48% KSPConvergedDefault 5915ms 4.97% 67.06% 5915ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3863ms 3.24% 70.30% 3912ms 3.29% __ieee754_log_fma 0 0% 70.30% 3660ms 3.07% boost::numeric::ublas::norm_inf (inline) 2477ms 2.08% 72.38% 3660ms 3.07% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.38% 3660ms 3.07% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.38% 3660ms 3.07% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 12ms 0.01% 72.39% 3318ms 2.79% MatNullSpaceRemove 3267ms 2.74% 75.14% 3267ms 2.74% __memcpy_avx_unaligned_erms 0 0% 75.14% 3228ms 2.71% PetscMemcpy (inline) 1717ms 1.44% 76.58% 2851ms 2.39% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 37ms 0.031% 76.61% 2816ms 2.36% std::pow (inline) 367ms 0.31% 76.92% 2774ms 2.33% __pow 20ms 0.017% 76.94% 2745ms 2.31% VecCopy 2743ms 2.30% 79.24% 2743ms 2.30% ddot_ 1ms 0.00084% 79.24% 2722ms 2.29% VecCopy_Seq (partial-inline) 14ms 0.012% 79.25% 2474ms 2.08% VecAXPY 7ms 0.0059% 79.26% 2460ms 2.07% VecAXPY_Seq 2435ms 2.04% 81.30% 2435ms 2.04% daxpy_ 329ms 0.28% 81.58% 2396ms 2.01% __ieee754_pow_fma 5ms 0.0042% 81.58% 2198ms 1.85% VecDot 0 0% 81.58% 2193ms 1.84% VecDot_Seq 3ms 0.0025% 81.59% 2193ms 1.84% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.59% 2056ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.59% 1916ms 1.61% VecMDot 6ms 0.005% 81.59% 1914ms 1.61% VecMXDot_Private 1893ms 1.59% 83.18% 1899ms 1.59% VecMDot_Seq 33ms 0.028% 83.21% 1701ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1504ms 1.26% 84.47% 1504ms 1.26% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1433ms 1.20% 85.68% 1480ms 1.24% exp_inline (inline) 0 0% 85.68% 1409ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 7ms 0.0059% 85.68% 1390ms 1.17% VecMAXPY 1376ms 1.16% 86.84% 1383ms 1.16% VecMAXPY_Seq 1131ms 0.95% 87.79% 1131ms 0.95% __memset_avx2_unaligned_erms 0 0% 87.79% 1123ms 0.94% PetscMemzero (inline) 3ms 0.0025% 87.79% 1112ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.79% 1106ms 0.93% CuboidMeshConstructor::Construct 0 0% 87.79% 1105ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 87.79% 1105ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 221ms 0.19% 87.98% 1103ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.98% 1089ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.98% 1089ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.98% 1089ms 0.91% boost_numeric_ublas_abs (inline) 1089ms 0.91% 88.89% 1089ms 0.91% std::abs (inline) 831ms 0.7% 89.59% 1076ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00084% 89.59% 1032ms 0.87% KSP_RemoveNullSpace (inline) 1ms 0.00084% 89.59% 998ms 0.84% Element::Element 2ms 0.0017% 89.59% 978ms 0.82% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.60% 937ms 0.79% VecDuplicate 3ms 0.0025% 89.60% 928ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 8ms 0.0067% 89.61% 853ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 6ms 0.005% 89.61% 846ms 0.71% VecScale 2ms 0.0017% 89.61% 840ms 0.71% VecScale_Seq 837ms 0.7% 90.31% 837ms 0.7% dscal_ 1ms 0.00084% 90.32% 834ms 0.7% BidomainAssembler::ComputeMatrixTerm 834ms 0.7% 91.02% 834ms 0.7% [libchaste_heart.so] 5ms 0.0042% 91.02% 793ms 0.67% PetscMallocA 6ms 0.005% 91.03% 788ms 0.66% PetscMallocAlign (partial-inline) 1ms 0.00084% 91.03% 776ms 0.65% VecNorm 2ms 0.0017% 91.03% 768ms 0.64% VecNorm_Seq 1ms 0.00084% 91.03% 740ms 0.62% AbstractBidomainSolver::FinaliseLinearSystem 211ms 0.18% 91.21% 737ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00084% 91.21% 716ms 0.6% BidomainProblem::WriteOneStep 0 0% 91.21% 647ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)