File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 361ms, 90.70% of 398ms total Dropped 135 nodes (cum <= 1.99ms) flat flat% sum% cum cum% 0 0% 0% 392ms 98.49% __libc_start_call_main 0 0% 0% 392ms 98.49% __libc_start_main_impl 0 0% 0% 392ms 98.49% _start 0 0% 0% 390ms 97.99% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 390ms 97.99% CxxTest::TestRunner::runAllTests 0 0% 0% 390ms 97.99% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 390ms 97.99% main 0 0% 0% 361ms 90.70% CxxTest::RealTestDescription::run 0 0% 0% 361ms 90.70% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 361ms 90.70% CxxTest::TestRunner::runTest (inline) 0 0% 0% 361ms 90.70% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 361ms 90.70% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 357ms 89.70% AbstractCardiacProblem::Solve 0 0% 0% 356ms 89.45% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 318ms 79.90% LinearSystem::Solve 0 0% 0% 317ms 79.65% KSPSolve 0 0% 0% 317ms 79.65% KSPSolve_CG 2ms 0.5% 0.5% 317ms 79.65% KSPSolve_Private 0 0% 0.5% 196ms 49.25% KSP_PCApply.lto_priv.7 0 0% 0.5% 188ms 47.24% PCApply 0 0% 0.5% 188ms 47.24% PCApply_BJacobi_Singleblock 0 0% 0.5% 148ms 37.19% KSPSolve_PREONLY (partial-inline) 0 0% 0.5% 134ms 33.67% MatSolve 133ms 33.42% 33.92% 134ms 33.67% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 33.92% 134ms 33.67% PCApply_ICC 0 0% 33.92% 66ms 16.58% MatMult 2ms 0.5% 34.42% 66ms 16.58% MatMult_SeqAIJ (partial-inline) 58ms 14.57% 48.99% 66ms 16.58% MatMult_SeqAIJ_Inode (inline) 40ms 10.05% 59.05% 40ms 10.05% ddot_ 0 0% 59.05% 34ms 8.54% AbstractCardiacTissue::SolveCellSystems 1ms 0.25% 59.30% 34ms 8.54% MatNullSpaceRemove 0 0% 59.30% 31ms 7.79% VecTDot 0 0% 59.30% 31ms 7.79% VecTDot_Seq 0 0% 59.30% 31ms 7.79% VecXDot_Seq_Private.constprop.0 0 0% 59.30% 26ms 6.53% CxxTest::RealWorldDescription::setUp 0 0% 59.30% 26ms 6.53% PetscInitialize 0 0% 59.30% 26ms 6.53% PetscSetup::setUpWorld 0 0% 59.30% 26ms 6.53% PetscSetupUtils::CommonSetup 0 0% 59.30% 26ms 6.53% PetscSetupUtils::InitialisePetsc 0 0% 59.30% 25ms 6.28% PMPI_Init_thread 0 0% 59.30% 25ms 6.28% ompi_mpi_init 0 0% 59.30% 22ms 5.53% VecMDot 1ms 0.25% 59.55% 22ms 5.53% VecMXDot_Private 21ms 5.28% 64.82% 21ms 5.28% VecMDot_Seq 1ms 0.25% 65.08% 20ms 5.03% 2ms 0.5% 65.58% 20ms 5.03% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 65.58% 17ms 4.27% VecDuplicate 0 0% 65.58% 17ms 4.27% VecDuplicate_Seq 0 0% 65.58% 17ms 4.27% orte_init 7ms 1.76% 67.34% 16ms 4.02% CellLuoRudy1991FromCellML::GetIIonic 0 0% 67.34% 14ms 3.52% KSP_PCApply (inline) 0 0% 67.34% 13ms 3.27% AbstractCardiacCell::ComputeExceptVoltage 4ms 1.01% 68.34% 12ms 3.02% __GI___exp 0 0% 68.34% 11ms 2.76% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.5% 68.84% 11ms 2.76% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 68.84% 11ms 2.76% EulerIvpOdeSolver::CalculateNextYValue 0 0% 68.84% 11ms 2.76% VecMAXPY 11ms 2.76% 71.61% 11ms 2.76% VecMAXPY_Seq 0 0% 71.61% 11ms 2.76% mca_base_framework_open 0 0% 71.61% 10ms 2.51% __GI__dl_catch_exception 0 0% 71.61% 10ms 2.51% _dl_catch_error 0 0% 71.61% 10ms 2.51% _dlerror_run 0 0% 71.61% 10ms 2.51% opal_stackframe_output 0 0% 71.61% 9ms 2.26% VecAYPX 9ms 2.26% 73.87% 9ms 2.26% VecAYPX_Seq 0 0% 73.87% 9ms 2.26% VecNorm 0 0% 73.87% 9ms 2.26% VecNorm_Seq 1ms 0.25% 74.12% 9ms 2.26% VecSetType (partial-inline) 0 0% 74.12% 9ms 2.26% hwloc_topology_load 0 0% 74.12% 9ms 2.26% mca_base_framework_components_register 0 0% 74.12% 9ms 2.26% mca_base_framework_register 0 0% 74.12% 8ms 2.01% VecAXPY 0 0% 74.12% 8ms 2.01% VecAXPY_Seq 0 0% 74.12% 8ms 2.01% VecCreate 0 0% 74.12% 8ms 2.01% hwloc_linux_get_tid_last_cpu_location 1ms 0.25% 74.37% 7ms 1.76% VecCreate_Seq 0 0% 74.37% 7ms 1.76% ___dlopen 7ms 1.76% 76.13% 7ms 1.76% __ieee754_exp_fma 0 0% 76.13% 7ms 1.76% _dl_init 0 0% 76.13% 7ms 1.76% _dl_open 0 0% 76.13% 7ms 1.76% call_init (inline) 7ms 1.76% 77.89% 7ms 1.76% daxpy_ 0 0% 77.89% 7ms 1.76% dl_open_worker 0 0% 77.89% 7ms 1.76% dlopen_doit 0 0% 77.89% 7ms 1.76% dlopen_implementation (inline) 0 0% 77.89% 7ms 1.76% mca_base_component_find 0 0% 77.89% 7ms 1.76% mca_base_component_repository_open 0 0% 77.89% 6ms 1.51% PetscMallocA 0 0% 77.89% 6ms 1.51% PetscMallocAlign (partial-inline) 0 0% 77.89% 6ms 1.51% PetscMemzero (inline) 2ms 0.5% 78.39% 6ms 1.51% __GI___libc_malloc 0 0% 78.39% 6ms 1.51% _dl_start_user 6ms 1.51% 79.90% 6ms 1.51% _mm_prefetch (inline) 0 0% 79.90% 6ms 1.51% dl_open_worker_begin 5ms 1.26% 81.16% 5ms 1.26% __memset_evex_unaligned_erms 0 0% 81.16% 5ms 1.26% __pow 0 0% 81.16% 5ms 1.26% _dl_lookup_symbol_x 0 0% 81.16% 5ms 1.26% std::pow (inline) 0 0% 81.16% 4ms 1.01% AbstractCardiacProblem::Initialise 0 0% 81.16% 4ms 1.01% BidomainSolver::SetupLinearSystem 0 0% 81.16% 4ms 1.01% VecCreate_Seq_Private 1ms 0.25% 81.41% 4ms 1.01% VecSet 0 0% 81.41% 4ms 1.01% __ieee754_pow_fma 1ms 0.25% 81.66% 4ms 1.01% _dl_runtime_resolve_xsavec 1ms 0.25% 81.91% 4ms 1.01% _int_malloc 1ms 0.25% 82.16% 4ms 1.01% boost::serialization::singleton::get_instance 3ms 0.75% 82.91% 4ms 1.01% do_lookup_x 0 0% 82.91% 4ms 1.01% opal_hwloc_base_get_topology 0 0% 82.91% 4ms 1.01% orte_ess_base_proc_binding 0 0% 82.91% 3ms 0.75% CxxTest::RealWorldDescription::tearDown 0 0% 82.91% 3ms 0.75% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 82.91% 3ms 0.75% PetscFinalize 0 0% 82.91% 3ms 0.75% PetscHeaderCreate_Private 1ms 0.25% 83.17% 3ms 0.75% PetscLayoutSetUp 0 0% 83.17% 3ms 0.75% PetscMemcpy (inline) 0 0% 83.17% 3ms 0.75% PetscSetup::tearDownWorld 0 0% 83.17% 3ms 0.75% PetscSetupUtils::CommonFinalize 1ms 0.25% 83.42% 3ms 0.75% VecDestroy 0 0% 83.42% 3ms 0.75% VecSet_Seq (partial-inline) 3ms 0.75% 84.17% 3ms 0.75% __GI___libc_read 1ms 0.25% 84.42% 3ms 0.75% __cxa_finalize 0 0% 84.42% 3ms 0.75% __dlclose 3ms 0.75% 85.18% 3ms 0.75% __memcpy_evex_unaligned_erms 0 0% 85.18% 3ms 0.75% __posix_memalign 3ms 0.75% 85.93% 3ms 0.75% __strcmp_evex 0 0% 85.93% 3ms 0.75% _dl_call_fini 0 0% 85.93% 3ms 0.75% _dl_close 1ms 0.25% 86.18% 3ms 0.75% _dl_close_worker (inline) 0 0% 86.18% 3ms 0.75% _dl_fixup 1ms 0.25% 86.43% 3ms 0.75% _dl_map_object 0 0% 86.43% 3ms 0.75% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 86.43% 3ms 0.75% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 86.43% 3ms 0.75% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 86.43% 3ms 0.75% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 86.43% 3ms 0.75% mca_base_framework_components_open 0 0% 86.43% 3ms 0.75% mca_base_var_group_register 0 0% 86.43% 3ms 0.75% ompi_mpi_finalize 0 0% 86.43% 2ms 0.5% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.43% 2ms 0.5% MPI_Comm_set_attr 1ms 0.25% 86.68% 2ms 0.5% PetscHeaderDestroy_Private 1ms 0.25% 86.93% 2ms 0.5% PetscLogObjCreateDefault 0 0% 86.93% 2ms 0.5% VecCopy 0 0% 86.93% 2ms 0.5% VecCopy_Seq (partial-inline) 0 0% 86.93% 2ms 0.5% [hwloc_pci.so] 2ms 0.5% 87.44% 2ms 0.5% [libchaste_heart.so] 2ms 0.5% 87.94% 2ms 0.5% [libm.so.6] 0 0% 87.94% 2ms 0.5% [libpciaccess.so.0.11.1] 0 0% 87.94% 2ms 0.5% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 87.94% 2ms 0.5% __GI_exit 0 0% 87.94% 2ms 0.5% ___pthread_mutex_lock 0 0% 87.94% 2ms 0.5% __run_exit_handlers 0 0% 87.94% 2ms 0.5% _dl_fini 0 0% 87.94% 2ms 0.5% _dl_map_object_deps 0 0% 87.94% 2ms 0.5% _dl_open_relocate_one_object (inline) 0 0% 87.94% 2ms 0.5% _dl_relocate_object 1ms 0.25% 88.19% 2ms 0.5% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 88.19% 2ms 0.5% elf_dynamic_do_Rela (inline) 0 0% 88.19% 2ms 0.5% elf_machine_rela (inline) 2ms 0.5% 88.69% 2ms 0.5% exp_inline (inline) 2ms 0.5% 89.20% 2ms 0.5% lll_mutex_lock_optimized (inline) 2ms 0.5% 89.70% 2ms 0.5% log_inline (inline) 2ms 0.5% 90.20% 2ms 0.5% malloc_consolidate 0 0% 90.20% 2ms 0.5% mca_base_component_repository_release 0 0% 90.20% 2ms 0.5% mca_base_component_var_register 0 0% 90.20% 2ms 0.5% mca_base_components_close 0 0% 90.20% 2ms 0.5% mca_base_select 0 0% 90.20% 2ms 0.5% mca_base_var_register 0 0% 90.20% 2ms 0.5% mca_topo_base_dist_graph_neighbors_count 0 0% 90.20% 2ms 0.5% ompi_attr_set_c 0 0% 90.20% 2ms 0.5% openaux 0 0% 90.20% 2ms 0.5% pci_get_strings 0 0% 90.20% 2ms 0.5% resolve_map (inline) 2ms 0.5% 90.70% 2ms 0.5% strcmp