File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 4242ms, 90.18% of 4704ms total Dropped 428 nodes (cum <= 23.52ms) flat flat% sum% cum cum% 0 0% 0% 4695ms 99.81% __libc_start_call_main 0 0% 0% 4695ms 99.81% __libc_start_main_impl 0 0% 0% 4695ms 99.81% _start 0 0% 0% 4693ms 99.77% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4693ms 99.77% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4693ms 99.77% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4693ms 99.77% main 0 0% 0% 4658ms 99.02% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4658ms 99.02% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4658ms 99.02% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.021% 0.021% 4652ms 98.89% AbstractCardiacProblem::Solve 0 0% 0.021% 4637ms 98.58% AbstractDynamicLinearPdeSolver::Solve 16ms 0.34% 0.36% 2325ms 49.43% AbstractCardiacTissue::SolveCellSystems 1ms 0.021% 0.38% 1836ms 39.03% LinearSystem::Solve 1ms 0.021% 0.4% 1806ms 38.39% KSPSolve 3ms 0.064% 0.47% 1806ms 38.39% KSPSolve_Private 0 0% 0.47% 1774ms 37.71% KSPSolve_SYMMLQ 20ms 0.43% 0.89% 1306ms 27.76% AbstractCardiacCell::ComputeExceptVoltage 40ms 0.85% 1.74% 1156ms 24.57% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.043% 1.79% 958ms 20.37% MatMult 12ms 0.26% 2.04% 953ms 20.26% MatMult_SeqAIJ (partial-inline) 928ms 19.73% 21.77% 953ms 20.26% MatMult_SeqAIJ_Inode (inline) 89ms 1.89% 23.66% 946ms 20.11% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.043% 23.70% 913ms 19.41% PCApply 1ms 0.021% 23.72% 907ms 19.28% PCApply_BJacobi_Singleblock 317ms 6.74% 30.46% 848ms 18.03% CellLuoRudy1991FromCellML::EvaluateYDerivatives 25ms 0.53% 30.99% 825ms 17.54% AbstractCardiacTissue::UpdateCaches (inline) 362ms 7.70% 38.69% 786ms 16.71% CellLuoRudy1991FromCellML::GetIIonic 0 0% 38.69% 770ms 16.37% KSPSolve_PREONLY (partial-inline) 1ms 0.021% 38.71% 713ms 15.16% MatSolve 0 0% 38.71% 713ms 15.16% PCApply_ICC 704ms 14.97% 53.68% 706ms 15.01% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 53.68% 649ms 13.80% KSP_PCApply.lto_priv.18 226ms 4.80% 58.48% 645ms 13.71% __GI___exp 37ms 0.79% 59.27% 443ms 9.42% BidomainSolver::SetupLinearSystem 0 0% 59.27% 348ms 7.40% KSPConvergedDefault 0 0% 59.27% 330ms 7.02% KSP_PCApply (partial-inline) 330ms 7.02% 66.28% 330ms 7.02% __ieee754_exp_fma 6ms 0.13% 66.41% 215ms 4.57% std::pow (inline) 17ms 0.36% 66.77% 208ms 4.42% __pow 14ms 0.3% 67.07% 190ms 4.04% __ieee754_pow_fma 84ms 1.79% 68.86% 130ms 2.76% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.021% 68.88% 127ms 2.70% MatNullSpaceRemove 125ms 2.66% 71.53% 125ms 2.66% [libchaste_heart.so] 111ms 2.36% 73.89% 111ms 2.36% log_inline (inline) 92ms 1.96% 75.85% 92ms 1.96% [libm.so.6] 87ms 1.85% 77.70% 87ms 1.85% ddot_ 0 0% 77.70% 86ms 1.83% VecDuplicate 79ms 1.68% 79.38% 79ms 1.68% TimeStepper::CalculateNextTime 27ms 0.57% 79.95% 74ms 1.57% TimeStepper::TimeStepper 2ms 0.043% 80.00% 69ms 1.47% VecMDot 5ms 0.11% 80.10% 67ms 1.42% VecMXDot_Private 26ms 0.55% 80.65% 61ms 1.30% MPI_Wtime 61ms 1.30% 81.95% 61ms 1.30% exp_inline (inline) 0 0% 81.95% 58ms 1.23% VecDot 18ms 0.38% 82.33% 57ms 1.21% TimeStepper::AdvanceOneTimeStep 5ms 0.11% 82.44% 57ms 1.21% VecMAXPY 0 0% 82.44% 54ms 1.15% VecDot_Seq 1ms 0.021% 82.46% 54ms 1.15% VecXDot_Seq_Private.constprop.0 8ms 0.17% 82.63% 52ms 1.11% PetscLogEventEndDefault 1ms 0.021% 82.65% 47ms 1% VecNorm 17ms 0.36% 83.01% 46ms 0.98% PetscLogEventBeginDefault 1ms 0.021% 83.04% 46ms 0.98% VecDuplicate_Seq 45ms 0.96% 83.99% 46ms 0.98% VecMDot_Seq 3ms 0.064% 84.06% 42ms 0.89% VecAXPY 0 0% 84.06% 42ms 0.89% VecNorm_Seq 11ms 0.23% 84.29% 40ms 0.85% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.021% 84.31% 40ms 0.85% VecDuplicate_MPI 39ms 0.83% 85.14% 39ms 0.83% __ieee754_log_fma 0 0% 85.14% 38ms 0.81% VecDestroy 32ms 0.68% 85.82% 37ms 0.79% AbstractOneStepIvpOdeSolver::Solve 2ms 0.043% 85.86% 37ms 0.79% VecCopy 35ms 0.74% 86.61% 37ms 0.79% VecMAXPY_Seq 20ms 0.43% 87.03% 36ms 0.77% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.021% 87.05% 35ms 0.74% VecCreate 35ms 0.74% 87.80% 35ms 0.74% [[vdso]] 35ms 0.74% 88.54% 35ms 0.74% [libchaste_ode.so] 0 0% 88.54% 35ms 0.74% __GI___clock_gettime 4ms 0.085% 88.63% 33ms 0.7% PetscMallocA 0 0% 88.63% 31ms 0.66% CxxTest::RealWorldDescription::setUp 0 0% 88.63% 31ms 0.66% PMPI_Init_thread 0 0% 88.63% 31ms 0.66% PetscInitialize 0 0% 88.63% 31ms 0.66% PetscSetup::setUpWorld 0 0% 88.63% 31ms 0.66% PetscSetupUtils::CommonSetup 0 0% 88.63% 31ms 0.66% PetscSetupUtils::InitialisePetsc 0 0% 88.63% 31ms 0.66% ompi_mpi_init 4ms 0.085% 88.71% 29ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 88.71% 29ms 0.62% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.021% 88.73% 29ms 0.62% PetscMallocAlign 0 0% 88.73% 29ms 0.62% VecAXPY_Seq 29ms 0.62% 89.35% 29ms 0.62% daxpy_ 0 0% 89.35% 27ms 0.57% VecNorm_MPI 0 0% 89.35% 27ms 0.57% VecNorm_MPI_Default.constprop.0 2ms 0.043% 89.39% 26ms 0.55% 1ms 0.021% 89.41% 26ms 0.55% VecCreate_MPI_Private 5ms 0.11% 89.52% 25ms 0.53% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 23ms 0.49% 90.01% 25ms 0.53% AbstractParameterisedSystem::GetAnyVariable 8ms 0.17% 90.18% 24ms 0.51% std::__cxx11::basic_string::basic_string