File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3671ms, 85.39% of 4299ms total Dropped 473 nodes (cum <= 21.50ms) flat flat% sum% cum cum% 0 0% 0% 4288ms 99.74% __libc_start_call_main 0 0% 0% 4288ms 99.74% __libc_start_main_impl 0 0% 0% 4288ms 99.74% _start 0 0% 0% 4284ms 99.65% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4284ms 99.65% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4284ms 99.65% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4284ms 99.65% main 0 0% 0% 4244ms 98.72% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4244ms 98.72% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4244ms 98.72% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4238ms 98.58% AbstractCardiacProblem::Solve 0 0% 0.047% 4221ms 98.19% AbstractDynamicLinearPdeSolver::Solve 26ms 0.6% 0.65% 2218ms 51.59% AbstractCardiacTissue::SolveCellSystems 0 0% 0.65% 1585ms 36.87% LinearSystem::Solve 0 0% 0.65% 1533ms 35.66% KSPSolve 3ms 0.07% 0.72% 1533ms 35.66% KSPSolve_Private 1ms 0.023% 0.74% 1471ms 34.22% KSPSolve_SYMMLQ 29ms 0.67% 1.42% 1221ms 28.40% AbstractCardiacCell::ComputeExceptVoltage 34ms 0.79% 2.21% 1050ms 24.42% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.047% 2.26% 1012ms 23.54% PCApply 0 0% 2.26% 1003ms 23.33% PCApply_BJacobi_Singleblock 56ms 1.30% 3.56% 877ms 20.40% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.56% 869ms 20.21% KSPSolve_PREONLY (partial-inline) 32ms 0.74% 4.30% 821ms 19.10% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.023% 4.33% 820ms 19.07% PCApply_ICC 4ms 0.093% 4.42% 819ms 19.05% MatSolve 801ms 18.63% 23.05% 809ms 18.82% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 215ms 5.00% 28.05% 806ms 18.75% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 28.05% 746ms 17.35% KSP_PCApply.lto_priv.18 264ms 6.14% 34.19% 743ms 17.28% CellLuoRudy1991FromCellML::GetIIonic 371ms 8.63% 42.82% 740ms 17.21% __GI___exp 3ms 0.07% 42.89% 394ms 9.16% MatMult 13ms 0.3% 43.20% 387ms 9.00% MatMult_SeqAIJ (partial-inline) 371ms 8.63% 51.83% 383ms 8.91% MatMult_SeqAIJ_Inode (inline) 76ms 1.77% 53.59% 358ms 8.33% BidomainSolver::SetupLinearSystem 285ms 6.63% 60.22% 351ms 8.16% __ieee754_exp_fma 0 0% 60.22% 341ms 7.93% KSP_PCApply (partial-inline) 0 0% 60.22% 328ms 7.63% KSPConvergedDefault 4ms 0.093% 60.32% 248ms 5.77% std::pow (inline) 30ms 0.7% 61.01% 243ms 5.65% __pow 23ms 0.54% 61.55% 213ms 4.95% __ieee754_pow_fma 0 0% 61.55% 120ms 2.79% MatNullSpaceRemove 111ms 2.58% 64.13% 111ms 2.58% log_inline (inline) 0 0% 64.13% 108ms 2.51% VecDuplicate 25ms 0.58% 64.71% 104ms 2.42% MPI_Wtime 55ms 1.28% 65.99% 97ms 2.26% CellLuoRudy1991FromCellML::VerifyStateVariables 2ms 0.047% 66.04% 79ms 1.84% __GI___clock_gettime 77ms 1.79% 67.83% 77ms 1.79% [[vdso]] 27ms 0.63% 68.46% 72ms 1.67% TimeStepper::TimeStepper 72ms 1.67% 70.13% 72ms 1.67% [libchaste_heart.so] 67ms 1.56% 71.69% 71ms 1.65% exp_inline (inline) 18ms 0.42% 72.11% 70ms 1.63% PetscLogEventEndDefault 1ms 0.023% 72.13% 67ms 1.56% VecMDot 2ms 0.047% 72.18% 66ms 1.54% VecMXDot_Private 3ms 0.07% 72.25% 64ms 1.49% VecDuplicate_MPI 9ms 0.21% 72.46% 62ms 1.44% VecCopy 10ms 0.23% 72.69% 60ms 1.40% PetscMallocA 7ms 0.16% 72.85% 55ms 1.28% PetscLogEventBeginDefault 55ms 1.28% 74.13% 55ms 1.28% ddot_ 16ms 0.37% 74.51% 53ms 1.23% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 74.51% 53ms 1.23% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 74.51% 53ms 1.23% VecMAXPY 8ms 0.19% 74.69% 52ms 1.21% AbstractCardiacCell::SetVoltage (partial-inline) 36ms 0.84% 75.53% 51ms 1.19% top12 (inline) 4ms 0.093% 75.62% 50ms 1.16% PetscMallocAlign (partial-inline) 2ms 0.047% 75.67% 47ms 1.09% VecCreate 0 0% 75.67% 46ms 1.07% VecDot 44ms 1.02% 76.69% 45ms 1.05% VecMDot_Seq 0 0% 76.69% 44ms 1.02% VecDuplicate_Seq 43ms 1.00% 77.69% 43ms 1.00% TimeStepper::CalculateNextTime 0 0% 77.69% 43ms 1.00% VecDestroy 43ms 1.00% 78.69% 43ms 1.00% asuint64 (inline) 0 0% 78.69% 41ms 0.95% VecDot_Seq 0 0% 78.69% 41ms 0.95% VecXDot_Seq_Private.constprop.0 40ms 0.93% 79.62% 41ms 0.95% __ieee754_log_fma 41ms 0.95% 80.58% 41ms 0.95% __memcpy_avx_unaligned_erms 25ms 0.58% 81.16% 39ms 0.91% AbstractOneStepIvpOdeSolver::Solve 36ms 0.84% 82.00% 38ms 0.88% AbstractParameterisedSystem::SetAnyVariable 0 0% 82.00% 36ms 0.84% CxxTest::RealWorldDescription::setUp 0 0% 82.00% 36ms 0.84% PetscInitialize 0 0% 82.00% 36ms 0.84% PetscSetup::setUpWorld 0 0% 82.00% 36ms 0.84% PetscSetupUtils::CommonSetup 0 0% 82.00% 36ms 0.84% PetscSetupUtils::InitialisePetsc 31ms 0.72% 82.72% 35ms 0.81% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 82.72% 35ms 0.81% PMPI_Init_thread 0 0% 82.72% 35ms 0.81% VecAXPY 0 0% 82.72% 35ms 0.81% ompi_mpi_init 33ms 0.77% 83.48% 33ms 0.77% DistributedVector::Iterator::operator!= 0 0% 83.48% 33ms 0.77% PetscMemcpy (inline) 0 0% 83.48% 33ms 0.77% VecCreate_MPI_Private 4ms 0.093% 83.58% 29ms 0.67% 28ms 0.65% 84.23% 29ms 0.67% VecMAXPY_Seq 1ms 0.023% 84.25% 28ms 0.65% VecCopy_Seq (partial-inline) 0 0% 84.25% 28ms 0.65% VecNorm 0 0% 84.25% 26ms 0.6% PetscMemzero (inline) 4ms 0.093% 84.35% 26ms 0.6% __GI___libc_malloc 25ms 0.58% 84.93% 25ms 0.58% __memset_avx2_unaligned_erms 14ms 0.33% 85.25% 24ms 0.56% TimeStepper::AdvanceOneTimeStep 1ms 0.023% 85.28% 24ms 0.56% VecNorm_Seq 2ms 0.047% 85.32% 24ms 0.56% __posix_memalign 0 0% 85.32% 23ms 0.54% VecSetType 0 0% 85.32% 23ms 0.54% orte_init 3ms 0.07% 85.39% 22ms 0.51% PetscOptionsFindPair