File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 120645ms, 91.02% of 132554ms total Dropped 1179 nodes (cum <= 662.77ms) flat flat% sum% cum cum% 0 0% 0% 132543ms 100% __libc_start_call_main 0 0% 0% 132543ms 100% __libc_start_main_impl 0 0% 0% 132543ms 100% _start 0 0% 0% 132540ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 132540ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 132540ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 132540ms 100% main 0 0% 0% 132500ms 100% AbstractConvergenceTester::Converge 0 0% 0% 132500ms 100% CxxTest::RealTestDescription::run 0 0% 0% 132500ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 132500ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 132500ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 132500ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 131276ms 99.04% AbstractCardiacProblem::Solve 14ms 0.011% 0.011% 130443ms 98.41% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0053% 0.016% 72905ms 55.00% LinearSystem::Solve 3ms 0.0023% 0.018% 72308ms 54.55% KSPSolve 9ms 0.0068% 0.025% 72307ms 54.55% KSPSolve_Private 11ms 0.0083% 0.033% 71909ms 54.25% KSPSolve_SYMMLQ 507ms 0.38% 0.42% 47897ms 36.13% AbstractCardiacTissue::SolveCellSystems 2ms 0.0015% 0.42% 40434ms 30.50% PCApply 7ms 0.0053% 0.42% 40417ms 30.49% PCApply_BJacobi_Singleblock 1ms 0.00075% 0.42% 37720ms 28.46% KSPSolve_PREONLY (partial-inline) 1088ms 0.82% 1.24% 37337ms 28.17% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0015% 1.25% 36715ms 27.70% PCApply_ICC 11ms 0.0083% 1.25% 36713ms 27.70% MatSolve 36104ms 27.24% 28.49% 36702ms 27.69% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 5ms 0.0038% 28.49% 34680ms 26.16% KSP_PCApply.lto_priv.18 7775ms 5.87% 34.36% 32838ms 24.77% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 10ms 0.0075% 34.37% 25146ms 18.97% MatMult 266ms 0.2% 34.57% 25136ms 18.96% MatMult_SeqAIJ (partial-inline) 24570ms 18.54% 53.10% 25132ms 18.96% MatMult_SeqAIJ_Inode (inline) 2260ms 1.70% 54.81% 16606ms 12.53% CardiacNewtonSolver::Solve 1538ms 1.16% 55.97% 10056ms 7.59% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 5468ms 4.13% 60.09% 9839ms 7.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 238ms 0.18% 60.27% 9107ms 6.87% AbstractCardiacTissue::UpdateCaches (inline) 1203ms 0.91% 61.18% 8427ms 6.36% BidomainSolver::SetupLinearSystem 1694ms 1.28% 62.46% 8414ms 6.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 8227ms 6.21% 68.67% 8227ms 6.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 68.67% 7544ms 5.69% KSP_PCApply (partial-inline) 5ms 0.0038% 68.67% 7159ms 5.40% KSPConvergedDefault 4088ms 3.08% 71.75% 4180ms 3.15% __ieee754_log_fma 0 0% 71.75% 4044ms 3.05% boost::numeric::ublas::norm_inf (inline) 2818ms 2.13% 73.88% 4044ms 3.05% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 73.88% 4044ms 3.05% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 73.88% 4044ms 3.05% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3498ms 2.64% 76.52% 3498ms 2.64% ddot_ 3476ms 2.62% 79.14% 3476ms 2.62% __memcpy_avx_unaligned_erms 1ms 0.00075% 79.14% 3437ms 2.59% PetscMemcpy (inline) 9ms 0.0068% 79.15% 3324ms 2.51% MatNullSpaceRemove 2121ms 1.60% 80.75% 3228ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 35ms 0.026% 80.78% 3105ms 2.34% std::pow (inline) 398ms 0.3% 81.08% 3055ms 2.30% __pow 11ms 0.0083% 81.08% 2901ms 2.19% VecDot 0 0% 81.08% 2890ms 2.18% VecDot_Seq 1ms 0.00075% 81.08% 2890ms 2.18% VecXDot_Seq_Private.constprop.0 18ms 0.014% 81.10% 2869ms 2.16% VecCopy 3ms 0.0023% 81.10% 2849ms 2.15% VecCopy_Seq (partial-inline) 19ms 0.014% 81.11% 2687ms 2.03% VecAXPY 3ms 0.0023% 81.12% 2668ms 2.01% VecAXPY_Seq 2643ms 1.99% 83.11% 2643ms 1.99% daxpy_ 389ms 0.29% 83.40% 2618ms 1.98% __ieee754_pow_fma 4ms 0.003% 83.41% 2166ms 1.63% VecMDot 13ms 0.0098% 83.42% 2162ms 1.63% VecMXDot_Private 2134ms 1.61% 85.03% 2143ms 1.62% VecMDot_Seq 2ms 0.0015% 85.03% 1998ms 1.51% AbstractFeVolumeIntegralAssembler::DoAssemble 27ms 0.02% 85.05% 1653ms 1.25% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1495ms 1.13% 86.18% 1541ms 1.16% exp_inline (inline) 0 0% 86.18% 1388ms 1.05% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.18% 1220ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.18% 1220ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.18% 1220ms 0.92% boost_numeric_ublas_abs (inline) 1220ms 0.92% 87.10% 1220ms 0.92% std::abs (inline) 6ms 0.0045% 87.10% 1149ms 0.87% VecMAXPY 1139ms 0.86% 87.96% 1143ms 0.86% VecMAXPY_Seq 4ms 0.003% 87.96% 1082ms 0.82% boost::numeric::ublas::matrix_assign (inline) 1070ms 0.81% 88.77% 1070ms 0.81% [libchaste_heart.so] 231ms 0.17% 88.95% 1067ms 0.8% boost::numeric::ublas::indexing_matrix_assign 686ms 0.52% 89.46% 1044ms 0.79% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.46% 1037ms 0.78% CuboidMeshConstructor::Construct 0 0% 89.46% 1036ms 0.78% AbstractTetrahedralMesh::ConstructRegularSlabMesh 5ms 0.0038% 89.47% 1036ms 0.78% DistributedTetrahedralMesh::ConstructCuboid 1ms 0.00075% 89.47% 986ms 0.74% KSP_RemoveNullSpace (inline) 2ms 0.0015% 89.47% 946ms 0.71% VecNorm 0 0% 89.47% 938ms 0.71% VecNorm_Seq 1ms 0.00075% 89.47% 933ms 0.7% Element::Element 1ms 0.00075% 89.47% 906ms 0.68% AbstractTetrahedralElement::CalculateJacobian 9ms 0.0068% 89.48% 897ms 0.68% VecScale 890ms 0.67% 90.15% 890ms 0.67% __memset_avx2_unaligned_erms 2ms 0.0015% 90.15% 888ms 0.67% VecScale_Seq 882ms 0.67% 90.82% 882ms 0.67% dscal_ 0 0% 90.82% 880ms 0.66% PetscMemzero (inline) 0 0% 90.82% 854ms 0.64% AbstractTetrahedralElement::AbstractTetrahedralElement 9ms 0.0068% 90.82% 849ms 0.64% BidomainAssembler::ComputeMatrixTerm 3ms 0.0023% 90.82% 841ms 0.63% AbstractBidomainSolver::FinaliseLinearSystem 9ms 0.0068% 90.83% 841ms 0.63% boost::numeric::ublas::c_matrix::c_matrix (inline) 239ms 0.18% 91.01% 835ms 0.63% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00075% 91.01% 769ms 0.58% BidomainProblem::WriteOneStep 4ms 0.003% 91.02% 741ms 0.56% VecDuplicate