File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3602ms, 84.69% of 4253ms total Dropped 478 nodes (cum <= 21.27ms) flat flat% sum% cum cum% 0 0% 0% 4243ms 99.76% __libc_start_call_main 0 0% 0% 4243ms 99.76% __libc_start_main_impl 0 0% 0% 4243ms 99.76% _start 0 0% 0% 4239ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4239ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4239ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4239ms 99.67% main 0 0% 0% 4197ms 98.68% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4197ms 98.68% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4197ms 98.68% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4189ms 98.50% AbstractCardiacProblem::Solve 3ms 0.071% 0.094% 4171ms 98.07% AbstractDynamicLinearPdeSolver::Solve 19ms 0.45% 0.54% 2232ms 52.48% AbstractCardiacTissue::SolveCellSystems 0 0% 0.54% 1544ms 36.30% LinearSystem::Solve 0 0% 0.54% 1487ms 34.96% KSPSolve 2ms 0.047% 0.59% 1487ms 34.96% KSPSolve_Private 3ms 0.071% 0.66% 1433ms 33.69% KSPSolve_SYMMLQ 21ms 0.49% 1.15% 1244ms 29.25% AbstractCardiacCell::ComputeExceptVoltage 24ms 0.56% 1.72% 1080ms 25.39% AbstractOneStepIvpOdeSolver::InternalSolve 56ms 1.32% 3.03% 894ms 21.02% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.071% 3.10% 875ms 20.57% PCApply 1ms 0.024% 3.13% 862ms 20.27% PCApply_BJacobi_Singleblock 221ms 5.20% 8.32% 827ms 19.45% CellLuoRudy1991FromCellML::EvaluateYDerivatives 30ms 0.71% 9.03% 800ms 18.81% AbstractCardiacTissue::UpdateCaches (inline) 364ms 8.56% 17.59% 760ms 17.87% __GI___exp 0 0% 17.59% 740ms 17.40% KSPSolve_PREONLY (partial-inline) 244ms 5.74% 23.32% 723ms 17.00% CellLuoRudy1991FromCellML::GetIIonic 5ms 0.12% 23.44% 686ms 16.13% MatSolve 0 0% 23.44% 686ms 16.13% PCApply_ICC 674ms 15.85% 39.29% 679ms 15.97% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 39.29% 643ms 15.12% KSP_PCApply.lto_priv.18 8ms 0.19% 39.48% 455ms 10.70% MatMult 14ms 0.33% 39.81% 439ms 10.32% MatMult_SeqAIJ (partial-inline) 424ms 9.97% 49.78% 439ms 10.32% MatMult_SeqAIJ_Inode (inline) 324ms 7.62% 57.39% 377ms 8.86% __ieee754_exp_fma 70ms 1.65% 59.04% 333ms 7.83% BidomainSolver::SetupLinearSystem 0 0% 59.04% 320ms 7.52% KSPConvergedDefault 0 0% 59.04% 309ms 7.27% KSP_PCApply (partial-inline) 25ms 0.59% 59.63% 258ms 6.07% __pow 0 0% 59.63% 258ms 6.07% std::pow (inline) 22ms 0.52% 60.15% 233ms 5.48% __ieee754_pow_fma 3ms 0.071% 60.22% 126ms 2.96% MatNullSpaceRemove 63ms 1.48% 61.70% 120ms 2.82% CellLuoRudy1991FromCellML::VerifyStateVariables 110ms 2.59% 64.28% 110ms 2.59% log_inline (inline) 24ms 0.56% 64.85% 98ms 2.30% MPI_Wtime 94ms 2.21% 67.06% 95ms 2.23% exp_inline (inline) 0 0% 67.06% 79ms 1.86% VecDuplicate 3ms 0.071% 67.13% 74ms 1.74% __GI___clock_gettime 73ms 1.72% 68.85% 73ms 1.72% ddot_ 28ms 0.66% 69.50% 72ms 1.69% TimeStepper::TimeStepper 71ms 1.67% 71.17% 71ms 1.67% [[vdso]] 0 0% 71.17% 66ms 1.55% VecMDot 5ms 0.12% 71.29% 66ms 1.55% VecMXDot_Private 5ms 0.12% 71.41% 63ms 1.48% PetscLogEventBeginDefault 15ms 0.35% 71.76% 63ms 1.48% PetscLogEventEndDefault 2ms 0.047% 71.81% 60ms 1.41% VecDot 58ms 1.36% 73.17% 58ms 1.36% [libchaste_heart.so] 2ms 0.047% 73.22% 57ms 1.34% VecMAXPY 1ms 0.024% 73.24% 56ms 1.32% VecDestroy 4ms 0.094% 73.34% 55ms 1.29% VecCopy 13ms 0.31% 73.64% 52ms 1.22% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 73.64% 52ms 1.22% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 73.67% 50ms 1.18% VecNorm 0 0% 73.67% 49ms 1.15% VecDot_Seq 0 0% 73.67% 49ms 1.15% VecDuplicate_MPI 0 0% 73.67% 49ms 1.15% VecXDot_Seq_Private.constprop.0 45ms 1.06% 74.72% 46ms 1.08% VecMDot_Seq 11ms 0.26% 74.98% 45ms 1.06% AbstractCardiacCell::SetVoltage (partial-inline) 43ms 1.01% 75.99% 43ms 1.01% TimeStepper::CalculateNextTime 3ms 0.071% 76.06% 43ms 1.01% VecAXPY 0 0% 76.06% 41ms 0.96% VecNorm_Seq 31ms 0.73% 76.79% 40ms 0.94% top12 (inline) 29ms 0.68% 77.47% 39ms 0.92% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 38ms 0.89% 78.37% 38ms 0.89% DistributedVector::Iterator::operator!= 0 0% 78.37% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 78.37% 37ms 0.87% PetscInitialize 0 0% 78.37% 37ms 0.87% PetscSetup::setUpWorld 0 0% 78.37% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 78.37% 37ms 0.87% PetscSetupUtils::InitialisePetsc 0 0% 78.37% 36ms 0.85% PMPI_Init_thread 0 0% 78.37% 36ms 0.85% ompi_mpi_init 13ms 0.31% 78.67% 35ms 0.82% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 35ms 0.82% 79.50% 35ms 0.82% __memcpy_avx_unaligned_erms 1ms 0.024% 79.52% 33ms 0.78% VecCreate 32ms 0.75% 80.27% 33ms 0.78% VecMAXPY_Seq 0 0% 80.27% 31ms 0.73% 4ms 0.094% 80.37% 31ms 0.73% VecCreate_MPI_Private 0 0% 80.37% 31ms 0.73% VecNorm_MPI 0 0% 80.37% 31ms 0.73% VecNorm_MPI_Default.constprop.0 31ms 0.73% 81.10% 31ms 0.73% __ieee754_log_fma 2ms 0.047% 81.14% 30ms 0.71% VecDuplicate_Seq 7ms 0.16% 81.31% 29ms 0.68% PetscMallocA 29ms 0.68% 81.99% 29ms 0.68% asuint64 (inline) 28ms 0.66% 82.65% 28ms 0.66% AbstractParameterisedSystem::SetAnyVariable 28ms 0.66% 83.31% 28ms 0.66% DistributedVector::Stripe::operator[] (inline) 0 0% 83.31% 28ms 0.66% PetscMemcpy (inline) 16ms 0.38% 83.68% 28ms 0.66% TimeStepper::AdvanceOneTimeStep 19ms 0.45% 84.13% 26ms 0.61% AbstractOneStepIvpOdeSolver::Solve 19ms 0.45% 84.58% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 0 0% 84.58% 25ms 0.59% VecAXPY_Seq 0 0% 84.58% 24ms 0.56% VecCopy_Seq (partial-inline) 4ms 0.094% 84.67% 23ms 0.54% PetscHeaderDestroy_Private 0 0% 84.67% 23ms 0.54% orte_init 1ms 0.024% 84.69% 22ms 0.52% PetscMallocAlign