File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3664ms, 87.07% of 4208ms total Dropped 446 nodes (cum <= 21.04ms) flat flat% sum% cum cum% 0 0% 0% 4200ms 99.81% __libc_start_call_main 0 0% 0% 4200ms 99.81% __libc_start_main_impl 0 0% 0% 4200ms 99.81% _start 0 0% 0% 4197ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4197ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4197ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4197ms 99.74% main 0 0% 0% 4158ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4158ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4158ms 98.81% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.048% 0.048% 4150ms 98.62% AbstractCardiacProblem::Solve 0 0% 0.048% 4132ms 98.19% AbstractDynamicLinearPdeSolver::Solve 12ms 0.29% 0.33% 2293ms 54.49% AbstractCardiacTissue::SolveCellSystems 0 0% 0.33% 1538ms 36.55% LinearSystem::Solve 0 0% 0.33% 1484ms 35.27% KSPSolve 5ms 0.12% 0.45% 1484ms 35.27% KSPSolve_Private 1ms 0.024% 0.48% 1435ms 34.10% KSPSolve_SYMMLQ 42ms 1% 1.47% 1317ms 31.30% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.55% 2.02% 1115ms 26.50% AbstractOneStepIvpOdeSolver::InternalSolve 59ms 1.40% 3.42% 950ms 22.58% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.42% 899ms 21.36% PCApply 3ms 0.071% 3.49% 895ms 21.27% PCApply_BJacobi_Singleblock 248ms 5.89% 9.39% 877ms 20.84% CellLuoRudy1991FromCellML::EvaluateYDerivatives 378ms 8.98% 18.37% 793ms 18.85% __GI___exp 21ms 0.5% 18.87% 777ms 18.46% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 18.87% 743ms 17.66% KSPSolve_PREONLY (partial-inline) 267ms 6.35% 25.21% 734ms 17.44% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 25.24% 683ms 16.23% PCApply_ICC 2ms 0.048% 25.29% 682ms 16.21% MatSolve 666ms 15.83% 41.11% 670ms 15.92% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 41.11% 657ms 15.61% KSP_PCApply.lto_priv.18 2ms 0.048% 41.16% 418ms 9.93% MatMult 9ms 0.21% 41.37% 413ms 9.81% MatMult_SeqAIJ (partial-inline) 401ms 9.53% 50.90% 413ms 9.81% MatMult_SeqAIJ_Inode (inline) 361ms 8.58% 59.48% 392ms 9.32% __ieee754_exp_fma 1ms 0.024% 59.51% 322ms 7.65% KSPConvergedDefault 0 0% 59.51% 317ms 7.53% KSP_PCApply (partial-inline) 43ms 1.02% 60.53% 247ms 5.87% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.55% 234ms 5.56% std::pow (inline) 20ms 0.48% 61.03% 233ms 5.54% __pow 24ms 0.57% 61.60% 212ms 5.04% __ieee754_pow_fma 78ms 1.85% 63.45% 155ms 3.68% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.45% 120ms 2.85% MatNullSpaceRemove 110ms 2.61% 66.06% 110ms 2.61% log_inline (inline) 0 0% 66.06% 109ms 2.59% VecDuplicate 73ms 1.73% 67.80% 73ms 1.73% exp_inline (inline) 0 0% 67.80% 72ms 1.71% VecMDot 5ms 0.12% 67.92% 72ms 1.71% VecMXDot_Private 10ms 0.24% 68.16% 67ms 1.59% MPI_Wtime 66ms 1.57% 69.72% 66ms 1.57% ddot_ 9ms 0.21% 69.94% 61ms 1.45% VecCopy 15ms 0.36% 70.29% 58ms 1.38% PetscLogEventBeginDefault 4ms 0.095% 70.39% 58ms 1.38% VecDuplicate_MPI 32ms 0.76% 71.15% 57ms 1.35% TimeStepper::TimeStepper 1ms 0.024% 71.17% 57ms 1.35% __GI___clock_gettime 56ms 1.33% 72.50% 56ms 1.33% [[vdso]] 18ms 0.43% 72.93% 53ms 1.26% PetscLogEventEndDefault 2ms 0.048% 72.98% 52ms 1.24% VecDot 34ms 0.81% 73.79% 51ms 1.21% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 73.79% 51ms 1.21% VecDuplicate_Seq 3ms 0.071% 73.86% 50ms 1.19% VecDestroy 2ms 0.048% 73.91% 49ms 1.16% VecCreate 47ms 1.12% 75.02% 49ms 1.16% VecMDot_Seq 14ms 0.33% 75.36% 48ms 1.14% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 75.36% 48ms 1.14% AbstractBidomainSolver::FinaliseLinearSystem 4ms 0.095% 75.45% 48ms 1.14% VecMAXPY 5ms 0.12% 75.57% 46ms 1.09% PetscMallocA 46ms 1.09% 76.66% 46ms 1.09% std::isinf (inline) 1ms 0.024% 76.69% 45ms 1.07% VecNorm 45ms 1.07% 77.76% 45ms 1.07% __memcpy_avx_unaligned_erms 3ms 0.071% 77.83% 43ms 1.02% VecAXPY 0 0% 77.83% 43ms 1.02% VecDot_Seq 0 0% 77.83% 43ms 1.02% VecXDot_Seq_Private.constprop.0 43ms 1.02% 78.85% 43ms 1.02% __ieee754_log_fma 4ms 0.095% 78.94% 41ms 0.97% PetscMallocAlign (partial-inline) 32ms 0.76% 79.71% 39ms 0.93% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 25ms 0.59% 80.30% 39ms 0.93% AbstractOneStepIvpOdeSolver::Solve 0 0% 80.30% 39ms 0.93% PetscMemcpy (inline) 0 0% 80.30% 39ms 0.93% VecNorm_Seq 39ms 0.93% 81.23% 39ms 0.93% [libchaste_heart.so] 0 0% 81.23% 35ms 0.83% CxxTest::RealWorldDescription::setUp 0 0% 81.23% 35ms 0.83% PMPI_Init_thread 0 0% 81.23% 35ms 0.83% PetscInitialize 0 0% 81.23% 35ms 0.83% PetscSetup::setUpWorld 0 0% 81.23% 35ms 0.83% PetscSetupUtils::CommonSetup 0 0% 81.23% 35ms 0.83% PetscSetupUtils::InitialisePetsc 0 0% 81.23% 35ms 0.83% ompi_mpi_init 34ms 0.81% 82.03% 34ms 0.81% TimeStepper::CalculateNextTime 10ms 0.24% 82.27% 33ms 0.78% top12 (inline) 5ms 0.12% 82.39% 32ms 0.76% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 82.41% 32ms 0.76% VecCopy_Seq (partial-inline) 0 0% 82.41% 32ms 0.76% VecNorm_MPI 0 0% 82.41% 32ms 0.76% VecNorm_MPI_Default.constprop.0 4ms 0.095% 82.51% 28ms 0.67% VecCreate_MPI_Private 1ms 0.024% 82.53% 27ms 0.64% VecAXPY_Seq 0 0% 82.53% 26ms 0.62% 1ms 0.024% 82.56% 26ms 0.62% VecSetType 26ms 0.62% 83.17% 26ms 0.62% asuint64 (inline) 26ms 0.62% 83.79% 26ms 0.62% daxpy_ 25ms 0.59% 84.39% 25ms 0.59% DistributedVector::Iterator::operator!= 0 0% 84.39% 25ms 0.59% PetscMemzero (inline) 24ms 0.57% 84.96% 25ms 0.59% VecMAXPY_Seq 24ms 0.57% 85.53% 24ms 0.57% [libm.so.6] 24ms 0.57% 86.10% 24ms 0.57% __memset_avx2_unaligned_erms 0 0% 86.10% 24ms 0.57% orte_init 20ms 0.48% 86.57% 23ms 0.55% AbstractParameterisedSystem::GetAnyVariable 4ms 0.095% 86.67% 23ms 0.55% PetscHeaderCreate_Private 2ms 0.048% 86.72% 23ms 0.55% std::vector::_M_assign_aux (inline) 0 0% 86.72% 23ms 0.55% std::vector::assign (inline) 4ms 0.095% 86.81% 22ms 0.52% PetscHeaderDestroy_Private 11ms 0.26% 87.07% 22ms 0.52% TimeStepper::AdvanceOneTimeStep