File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110472ms, 91.18% of 121161ms total Dropped 1149 nodes (cum <= 605.80ms) flat flat% sum% cum cum% 0 0% 0% 121146ms 100% __libc_start_call_main 0 0% 0% 121146ms 100% __libc_start_main_impl 0 0% 0% 121146ms 100% _start 0 0% 0% 121144ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 121144ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 121144ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 121144ms 100% main 0 0% 0% 121106ms 100% AbstractConvergenceTester::Converge 0 0% 0% 121106ms 100% CxxTest::RealTestDescription::run 0 0% 0% 121106ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 121106ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 121106ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 121106ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 8ms 0.0066% 0.0066% 119858ms 98.92% AbstractCardiacProblem::Solve 7ms 0.0058% 0.012% 119032ms 98.24% AbstractDynamicLinearPdeSolver::Solve 1ms 0.00083% 0.013% 67618ms 55.81% LinearSystem::Solve 3ms 0.0025% 0.016% 67130ms 55.41% KSPSolve 11ms 0.0091% 0.025% 67127ms 55.40% KSPSolve_Private 11ms 0.0091% 0.034% 66684ms 55.04% KSPSolve_SYMMLQ 219ms 0.18% 0.21% 42448ms 35.03% AbstractCardiacTissue::SolveCellSystems 6ms 0.005% 0.22% 37667ms 31.09% PCApply 3ms 0.0025% 0.22% 37655ms 31.08% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.22% 34721ms 28.66% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.23% 33585ms 27.72% PCApply_ICC 11ms 0.0091% 0.23% 33582ms 27.72% MatSolve 33035ms 27.27% 27.50% 33571ms 27.71% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1388ms 1.15% 28.65% 32972ms 27.21% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.65% 32468ms 26.80% KSP_PCApply.lto_priv.18 6874ms 5.67% 34.32% 28529ms 23.55% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 14ms 0.012% 34.33% 22605ms 18.66% MatMult 3399ms 2.81% 37.14% 22591ms 18.65% MatMult_SeqAIJ 18698ms 15.43% 52.57% 19206ms 15.85% MatMult_SeqAIJ_Inode (inline) 1987ms 1.64% 54.21% 14801ms 12.22% CardiacNewtonSolver::Solve 4380ms 3.62% 57.82% 8636ms 7.13% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 288ms 0.24% 58.06% 8622ms 7.12% AbstractCardiacTissue::UpdateCaches (inline) 2073ms 1.71% 59.77% 8136ms 6.72% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1076ms 0.89% 60.66% 7883ms 6.51% BidomainSolver::SetupLinearSystem 1338ms 1.10% 61.77% 7509ms 6.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.77% 7172ms 5.92% KSP_PCApply (partial-inline) 7ms 0.0058% 61.77% 6558ms 5.41% KSPConvergedDefault 5883ms 4.86% 66.63% 5883ms 4.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3957ms 3.27% 69.89% 4006ms 3.31% __ieee754_log_fma 0 0% 69.89% 3747ms 3.09% boost::numeric::ublas::norm_inf (inline) 2530ms 2.09% 71.98% 3747ms 3.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.98% 3747ms 3.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.98% 3747ms 3.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3523ms 2.91% 74.89% 3523ms 2.91% __memcpy_avx_unaligned_erms 0 0% 74.89% 3480ms 2.87% PetscMemcpy (inline) 3ms 0.0025% 74.89% 3420ms 2.82% MatNullSpaceRemove 20ms 0.017% 74.91% 2977ms 2.46% VecCopy 2ms 0.0017% 74.91% 2953ms 2.44% VecCopy_Seq (partial-inline) 1663ms 1.37% 76.28% 2870ms 2.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2859ms 2.36% 78.64% 2859ms 2.36% ddot_ 12ms 0.0099% 78.65% 2703ms 2.23% VecAXPY 6ms 0.005% 78.66% 2691ms 2.22% VecAXPY_Seq 37ms 0.031% 78.69% 2681ms 2.21% std::pow (inline) 2677ms 2.21% 80.90% 2677ms 2.21% daxpy_ 393ms 0.32% 81.22% 2641ms 2.18% __pow 3ms 0.0025% 81.22% 2357ms 1.95% VecDot 0 0% 81.22% 2354ms 1.94% VecDot_Seq 5ms 0.0041% 81.23% 2354ms 1.94% VecXDot_Seq_Private.constprop.0 308ms 0.25% 81.48% 2230ms 1.84% __ieee754_pow_fma 1ms 0.00083% 81.48% 2057ms 1.70% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.0033% 81.49% 2000ms 1.65% VecMDot 14ms 0.012% 81.50% 1996ms 1.65% VecMXDot_Private 1971ms 1.63% 83.12% 1979ms 1.63% VecMDot_Seq 37ms 0.031% 83.15% 1725ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 13ms 0.011% 83.17% 1417ms 1.17% VecMAXPY 0 0% 83.17% 1408ms 1.16% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1399ms 1.15% 84.32% 1404ms 1.16% VecMAXPY_Seq 1353ms 1.12% 85.44% 1397ms 1.15% exp_inline (inline) 1352ms 1.12% 86.55% 1352ms 1.12% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1334ms 1.10% 87.65% 1334ms 1.10% __memset_avx2_unaligned_erms 0 0% 87.65% 1329ms 1.10% PetscMemzero (inline) 0 0% 87.65% 1113ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.65% 1113ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.65% 1113ms 0.92% boost_numeric_ublas_abs (inline) 1113ms 0.92% 88.57% 1113ms 0.92% std::abs (inline) 0 0% 88.57% 1095ms 0.9% CuboidMeshConstructor::Construct 0 0% 88.57% 1094ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00083% 88.57% 1094ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 8ms 0.0066% 88.58% 1087ms 0.9% boost::numeric::ublas::matrix_assign (inline) 3ms 0.0025% 88.58% 1078ms 0.89% VecDuplicate 215ms 0.18% 88.76% 1077ms 0.89% boost::numeric::ublas::indexing_matrix_assign 790ms 0.65% 89.41% 1070ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 89.41% 995ms 0.82% Element::Element 8ms 0.0066% 89.42% 987ms 0.81% VecScale 3ms 0.0025% 89.42% 979ms 0.81% VecScale_Seq 973ms 0.8% 90.23% 973ms 0.8% dscal_ 2ms 0.0017% 90.23% 970ms 0.8% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 90.23% 925ms 0.76% AbstractTetrahedralElement::AbstractTetrahedralElement 16ms 0.013% 90.24% 891ms 0.74% PetscMallocA 879ms 0.73% 90.97% 879ms 0.73% [libchaste_heart.so] 7ms 0.0058% 90.97% 875ms 0.72% PetscMallocAlign (partial-inline) 6ms 0.005% 90.98% 873ms 0.72% BidomainAssembler::ComputeMatrixTerm 5ms 0.0041% 90.98% 844ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 90.98% 776ms 0.64% AbstractBidomainSolver::FinaliseLinearSystem 211ms 0.17% 91.16% 774ms 0.64% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.0025% 91.16% 753ms 0.62% BidomainProblem::WriteOneStep 3ms 0.0025% 91.16% 732ms 0.6% VecNorm 1ms 0.00083% 91.16% 723ms 0.6% VecNorm_Seq 6ms 0.005% 91.17% 703ms 0.58% VecDuplicate_Seq 0 0% 91.17% 649ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 11ms 0.0091% 91.18% 606ms 0.5% VecSetType