File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108238ms, 91.93% of 117739ms total Dropped 1120 nodes (cum <= 588.70ms) flat flat% sum% cum cum% 0 0% 0% 117724ms 100% __libc_start_call_main 0 0% 0% 117724ms 100% __libc_start_main_impl 0 0% 0% 117724ms 100% _start 0 0% 0% 117722ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117722ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117722ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117722ms 100% main 0 0% 0% 117683ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117683ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117683ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117683ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117683ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117683ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 116447ms 98.90% AbstractCardiacProblem::Solve 6ms 0.0051% 0.0068% 115766ms 98.32% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.0093% 64533ms 54.81% LinearSystem::Solve 3ms 0.0025% 0.012% 64110ms 54.45% KSPSolve 13ms 0.011% 0.023% 64107ms 54.45% KSPSolve_Private 8ms 0.0068% 0.03% 63782ms 54.17% KSPSolve_SYMMLQ 210ms 0.18% 0.21% 42446ms 36.05% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.21% 36837ms 31.29% PCApply 0 0% 0.21% 36826ms 31.28% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.21% 34616ms 29.40% KSPSolve_PREONLY (partial-inline) 4ms 0.0034% 0.22% 33422ms 28.39% MatSolve 0 0% 0.22% 33422ms 28.39% PCApply_ICC 32963ms 28.00% 28.21% 33418ms 28.38% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1381ms 1.17% 29.39% 32730ms 27.80% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 29.39% 31701ms 26.92% KSP_PCApply.lto_priv.18 6997ms 5.94% 35.33% 28274ms 24.01% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0059% 35.33% 21418ms 18.19% MatMult 263ms 0.22% 35.56% 21411ms 18.19% MatMult_SeqAIJ (partial-inline) 20872ms 17.73% 53.28% 21411ms 18.19% MatMult_SeqAIJ_Inode (inline) 1951ms 1.66% 54.94% 14585ms 12.39% CardiacNewtonSolver::Solve 296ms 0.25% 55.19% 8887ms 7.55% AbstractCardiacTissue::UpdateCaches (inline) 4557ms 3.87% 59.06% 8666ms 7.36% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2002ms 1.70% 60.76% 8383ms 7.12% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1132ms 0.96% 61.73% 7782ms 6.61% BidomainSolver::SetupLinearSystem 2ms 0.0017% 61.73% 7315ms 6.21% KSP_PCApply (partial-inline) 1073ms 0.91% 62.64% 7105ms 6.03% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0025% 62.64% 6638ms 5.64% KSPConvergedDefault 5776ms 4.91% 67.55% 5776ms 4.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3849ms 3.27% 70.82% 3888ms 3.30% __ieee754_log_fma 0 0% 70.82% 3560ms 3.02% boost::numeric::ublas::norm_inf (inline) 2404ms 2.04% 72.86% 3560ms 3.02% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.86% 3560ms 3.02% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.86% 3560ms 3.02% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 8ms 0.0068% 72.86% 3386ms 2.88% MatNullSpaceRemove 22ms 0.019% 72.88% 3136ms 2.66% std::pow (inline) 402ms 0.34% 73.22% 3111ms 2.64% __pow 3017ms 2.56% 75.79% 3017ms 2.56% __memcpy_avx_unaligned_erms 0 0% 75.79% 2995ms 2.54% PetscMemcpy (inline) 1774ms 1.51% 77.29% 2902ms 2.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 356ms 0.3% 77.60% 2701ms 2.29% __ieee754_pow_fma 2593ms 2.20% 79.80% 2593ms 2.20% ddot_ 22ms 0.019% 79.82% 2573ms 2.19% VecCopy 3ms 0.0025% 79.82% 2549ms 2.16% VecCopy_Seq (partial-inline) 15ms 0.013% 79.83% 2300ms 1.95% VecAXPY 7ms 0.0059% 79.84% 2285ms 1.94% VecAXPY_Seq 2267ms 1.93% 81.76% 2267ms 1.93% daxpy_ 3ms 0.0025% 81.77% 2061ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 3ms 0.0025% 81.77% 2061ms 1.75% VecDot 0 0% 81.77% 2058ms 1.75% VecDot_Seq 0 0% 81.77% 2058ms 1.75% VecXDot_Seq_Private.constprop.0 1ms 0.00085% 81.77% 1906ms 1.62% VecMDot 13ms 0.011% 81.78% 1905ms 1.62% VecMXDot_Private 1876ms 1.59% 83.37% 1890ms 1.61% VecMDot_Seq 41ms 0.035% 83.41% 1679ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1526ms 1.30% 84.71% 1586ms 1.35% exp_inline (inline) 1511ms 1.28% 85.99% 1511ms 1.28% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 4ms 0.0034% 85.99% 1472ms 1.25% VecMAXPY 1463ms 1.24% 87.23% 1468ms 1.25% VecMAXPY_Seq 0 0% 87.23% 1414ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 5ms 0.0042% 87.24% 1107ms 0.94% boost::numeric::ublas::matrix_assign (inline) 206ms 0.17% 87.41% 1094ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.41% 1085ms 0.92% CuboidMeshConstructor::Construct 0 0% 87.41% 1084ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 87.42% 1084ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 0 0% 87.42% 1064ms 0.9% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.42% 1064ms 0.9% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.42% 1064ms 0.9% boost_numeric_ublas_abs (inline) 1064ms 0.9% 88.32% 1064ms 0.9% std::abs (inline) 817ms 0.69% 89.01% 1057ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.01% 980ms 0.83% Element::Element 4ms 0.0034% 89.02% 962ms 0.82% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00085% 89.02% 922ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.0051% 89.02% 892ms 0.76% BidomainAssembler::ComputeMatrixTerm 887ms 0.75% 89.78% 887ms 0.75% __memset_avx2_unaligned_erms 0 0% 89.78% 879ms 0.75% PetscMemzero (inline) 870ms 0.74% 90.51% 870ms 0.74% [libchaste_heart.so] 10ms 0.0085% 90.52% 861ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 90.52% 812ms 0.69% VecDuplicate 0 0% 90.52% 723ms 0.61% VecNorm 721ms 0.61% 91.14% 721ms 0.61% log_inline (inline) 1ms 0.00085% 91.14% 718ms 0.61% VecNorm_Seq 0 0% 91.14% 711ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 227ms 0.19% 91.33% 707ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 5ms 0.0042% 91.33% 684ms 0.58% VecScale 4ms 0.0034% 91.34% 679ms 0.58% VecScale_Seq 675ms 0.57% 91.91% 675ms 0.57% dscal_ 9ms 0.0076% 91.92% 668ms 0.57% PetscMallocA 14ms 0.012% 91.93% 659ms 0.56% PetscMallocAlign (partial-inline) 0 0% 91.93% 647ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 1ms 0.00085% 91.93% 629ms 0.53% BidomainProblem::WriteOneStep