File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3682ms, 87.40% of 4213ms total Dropped 445 nodes (cum <= 21.07ms) flat flat% sum% cum cum% 0 0% 0% 4204ms 99.79% __libc_start_call_main 0 0% 0% 4204ms 99.79% __libc_start_main_impl 0 0% 0% 4204ms 99.79% _start 0 0% 0% 4201ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4201ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4201ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4201ms 99.72% main 0 0% 0% 4163ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4163ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4163ms 98.81% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4155ms 98.62% AbstractCardiacProblem::Solve 2ms 0.047% 0.071% 4147ms 98.43% AbstractDynamicLinearPdeSolver::Solve 15ms 0.36% 0.43% 2263ms 53.71% AbstractCardiacTissue::SolveCellSystems 0 0% 0.43% 1590ms 37.74% LinearSystem::Solve 0 0% 0.43% 1542ms 36.60% KSPSolve 6ms 0.14% 0.57% 1542ms 36.60% KSPSolve_Private 3ms 0.071% 0.64% 1493ms 35.44% KSPSolve_SYMMLQ 32ms 0.76% 1.40% 1261ms 29.93% AbstractCardiacCell::ComputeExceptVoltage 32ms 0.76% 2.16% 1069ms 25.37% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.047% 2.21% 963ms 22.86% PCApply 0 0% 2.21% 956ms 22.69% PCApply_BJacobi_Singleblock 43ms 1.02% 3.23% 884ms 20.98% EulerIvpOdeSolver::CalculateNextYValue 231ms 5.48% 8.71% 829ms 19.68% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 8.71% 792ms 18.80% KSPSolve_PREONLY (partial-inline) 38ms 0.9% 9.61% 787ms 18.68% AbstractCardiacTissue::UpdateCaches (inline) 340ms 8.07% 17.68% 775ms 18.40% __GI___exp 1ms 0.024% 17.71% 738ms 17.52% PCApply_ICC 0 0% 17.71% 737ms 17.49% MatSolve 728ms 17.28% 34.99% 734ms 17.42% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 270ms 6.41% 41.40% 723ms 17.16% CellLuoRudy1991FromCellML::GetIIonic 0 0% 41.40% 705ms 16.73% KSP_PCApply.lto_priv.18 1ms 0.024% 41.42% 428ms 10.16% MatMult 2ms 0.047% 41.47% 420ms 9.97% MatMult_SeqAIJ 415ms 9.85% 51.32% 420ms 9.97% MatMult_SeqAIJ_Inode (inline) 393ms 9.33% 60.65% 417ms 9.90% __ieee754_exp_fma 1ms 0.024% 60.67% 344ms 8.17% KSPConvergedDefault 0 0% 60.67% 330ms 7.83% KSP_PCApply (partial-inline) 40ms 0.95% 61.62% 258ms 6.12% BidomainSolver::SetupLinearSystem 1ms 0.024% 61.64% 215ms 5.10% std::pow (inline) 21ms 0.5% 62.14% 214ms 5.08% __pow 24ms 0.57% 62.71% 193ms 4.58% __ieee754_pow_fma 72ms 1.71% 64.42% 158ms 3.75% CellLuoRudy1991FromCellML::VerifyStateVariables 3ms 0.071% 64.49% 135ms 3.20% MatNullSpaceRemove 1ms 0.024% 64.51% 107ms 2.54% VecDuplicate 91ms 2.16% 66.67% 91ms 2.16% log_inline (inline) 1ms 0.024% 66.70% 80ms 1.90% VecMDot 3ms 0.071% 66.77% 79ms 1.88% VecMXDot_Private 19ms 0.45% 67.22% 75ms 1.78% MPI_Wtime 67ms 1.59% 68.81% 68ms 1.61% exp_inline (inline) 28ms 0.66% 69.48% 67ms 1.59% TimeStepper::TimeStepper 13ms 0.31% 69.78% 65ms 1.54% PetscLogEventEndDefault 1ms 0.024% 69.81% 60ms 1.42% VecDuplicate_MPI 59ms 1.40% 71.21% 59ms 1.40% ddot_ 5ms 0.12% 71.33% 56ms 1.33% VecDestroy 2ms 0.047% 71.37% 56ms 1.33% __GI___clock_gettime 54ms 1.28% 72.66% 54ms 1.28% [[vdso]] 7ms 0.17% 72.82% 52ms 1.23% VecCopy 2ms 0.047% 72.87% 52ms 1.23% VecMAXPY 52ms 1.23% 74.10% 52ms 1.23% VecMDot_Seq 4ms 0.095% 74.20% 49ms 1.16% PetscMallocA 3ms 0.071% 74.27% 46ms 1.09% VecDuplicate_Seq 0 0% 74.27% 46ms 1.09% VecNorm 1ms 0.024% 74.29% 45ms 1.07% PetscMallocAlign (partial-inline) 25ms 0.59% 74.89% 44ms 1.04% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 44ms 1.04% 75.93% 44ms 1.04% TimeStepper::CalculateNextTime 4ms 0.095% 76.03% 44ms 1.04% VecCreate 34ms 0.81% 76.83% 43ms 1.02% AbstractOneStepIvpOdeSolver::Solve 5ms 0.12% 76.95% 43ms 1.02% VecAXPY 9ms 0.21% 77.17% 42ms 1% PetscLogEventBeginDefault 40ms 0.95% 78.12% 40ms 0.95% __ieee754_log_fma 40ms 0.95% 79.06% 40ms 0.95% std::isinf (inline) 25ms 0.59% 79.66% 39ms 0.93% TimeStepper::AdvanceOneTimeStep 0 0% 79.66% 39ms 0.93% VecNorm_Seq 7ms 0.17% 79.82% 37ms 0.88% AbstractCardiacCell::SetVoltage (partial-inline) 37ms 0.88% 80.70% 37ms 0.88% __memcpy_avx_unaligned_erms 31ms 0.74% 81.44% 36ms 0.85% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.071% 81.51% 36ms 0.85% VecCreate_MPI_Private 36ms 0.85% 82.36% 36ms 0.85% [libchaste_heart.so] 0 0% 82.36% 35ms 0.83% PetscMemcpy (inline) 0 0% 82.36% 35ms 0.83% VecDot 0 0% 82.36% 34ms 0.81% VecDot_Seq 1ms 0.024% 82.39% 34ms 0.81% VecXDot_Seq_Private.constprop.0 16ms 0.38% 82.77% 34ms 0.81% top12 (inline) 0 0% 82.77% 33ms 0.78% CxxTest::RealWorldDescription::setUp 0 0% 82.77% 33ms 0.78% PMPI_Init_thread 0 0% 82.77% 33ms 0.78% PetscInitialize 0 0% 82.77% 33ms 0.78% PetscSetup::setUpWorld 0 0% 82.77% 33ms 0.78% PetscSetupUtils::CommonSetup 0 0% 82.77% 33ms 0.78% PetscSetupUtils::InitialisePetsc 31ms 0.74% 83.50% 33ms 0.78% VecMAXPY_Seq 0 0% 83.50% 33ms 0.78% ompi_mpi_init 1ms 0.024% 83.53% 31ms 0.74% VecNorm_MPI 2ms 0.047% 83.57% 30ms 0.71% 0 0% 83.57% 30ms 0.71% PetscMemzero (inline) 0 0% 83.57% 30ms 0.71% VecNorm_MPI_Default.constprop.0 30ms 0.71% 84.29% 30ms 0.71% __memset_avx2_unaligned_erms 13ms 0.31% 84.60% 29ms 0.69% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 84.60% 29ms 0.69% AbstractBidomainSolver::FinaliseLinearSystem 25ms 0.59% 85.19% 29ms 0.69% AbstractParameterisedSystem::GetAnyVariable 0 0% 85.19% 29ms 0.69% VecAXPY_Seq 29ms 0.69% 85.88% 29ms 0.69% daxpy_ 7ms 0.17% 86.04% 27ms 0.64% PetscHeaderDestroy_Private 8ms 0.19% 86.23% 27ms 0.64% __GI___libc_malloc 8ms 0.19% 86.42% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 24ms 0.57% 86.99% 25ms 0.59% AbstractParameterisedSystem::SetAnyVariable 2ms 0.047% 87.04% 25ms 0.59% VecCopy_Seq (partial-inline) 7ms 0.17% 87.21% 25ms 0.59% std::__cxx11::basic_string::basic_string 1ms 0.024% 87.23% 24ms 0.57% __posix_memalign 7ms 0.17% 87.40% 22ms 0.52% PetscHeaderCreate_Private 0 0% 87.40% 22ms 0.52% orte_init