File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 298ms, 89.49% of 333ms total Dropped 147 nodes (cum <= 1.67ms) flat flat% sum% cum cum% 0 0% 0% 325ms 97.60% __libc_start_call_main 0 0% 0% 325ms 97.60% __libc_start_main_impl 0 0% 0% 325ms 97.60% _start 0 0% 0% 323ms 97.00% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 323ms 97.00% CxxTest::TestRunner::runAllTests 0 0% 0% 323ms 97.00% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 323ms 97.00% main 0 0% 0% 293ms 87.99% CxxTest::RealTestDescription::run 0 0% 0% 293ms 87.99% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 293ms 87.99% CxxTest::TestRunner::runTest (inline) 0 0% 0% 293ms 87.99% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 293ms 87.99% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 289ms 86.79% AbstractCardiacProblem::Solve 0 0% 0% 289ms 86.79% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 253ms 75.98% KSPSolve 0 0% 0% 253ms 75.98% KSPSolve_Private 0 0% 0% 253ms 75.98% LinearSystem::Solve 0 0% 0% 252ms 75.68% KSPSolve_CG 0 0% 0% 158ms 47.45% KSP_PCApply.lto_priv.7 0 0% 0% 155ms 46.55% PCApply 0 0% 0% 155ms 46.55% PCApply_BJacobi_Singleblock 0 0% 0% 135ms 40.54% KSPSolve_PREONLY (partial-inline) 0 0% 0% 116ms 34.83% MatSolve 115ms 34.53% 34.53% 116ms 34.83% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 34.53% 116ms 34.83% PCApply_ICC 1ms 0.3% 34.83% 50ms 15.02% MatMult 1ms 0.3% 35.14% 49ms 14.71% MatMult_SeqAIJ (partial-inline) 47ms 14.11% 49.25% 49ms 14.71% MatMult_SeqAIJ_Inode (inline) 0 0% 49.25% 33ms 9.91% AbstractCardiacTissue::SolveCellSystems 1ms 0.3% 49.55% 32ms 9.61% MatNullSpaceRemove 0 0% 49.55% 27ms 8.11% CxxTest::RealWorldDescription::setUp 0 0% 49.55% 27ms 8.11% PMPI_Init_thread 0 0% 49.55% 27ms 8.11% PetscInitialize 0 0% 49.55% 27ms 8.11% PetscSetup::setUpWorld 0 0% 49.55% 27ms 8.11% PetscSetupUtils::CommonSetup 0 0% 49.55% 27ms 8.11% PetscSetupUtils::InitialisePetsc 0 0% 49.55% 27ms 8.11% ompi_mpi_init 24ms 7.21% 56.76% 24ms 7.21% ddot_ 1ms 0.3% 57.06% 23ms 6.91% 1ms 0.3% 57.36% 21ms 6.31% AbstractCardiacCell::ComputeExceptVoltage 0 0% 57.36% 21ms 6.31% KSP_PCApply (partial-inline) 0 0% 57.36% 18ms 5.41% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 57.36% 18ms 5.41% orte_init 0 0% 57.36% 17ms 5.11% VecMDot 17ms 5.11% 62.46% 17ms 5.11% VecMDot_Seq 0 0% 62.46% 17ms 5.11% VecMXDot_Private 1ms 0.3% 62.76% 17ms 5.11% VecTDot 0 0% 62.76% 16ms 4.80% VecTDot_Seq 0 0% 62.76% 16ms 4.80% VecXDot_Seq_Private.constprop.0 1ms 0.3% 63.06% 15ms 4.50% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.6% 63.66% 14ms 4.20% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 63.66% 14ms 4.20% VecMAXPY 14ms 4.20% 67.87% 14ms 4.20% VecMAXPY_Seq 7ms 2.10% 69.97% 12ms 3.60% __GI___exp 0 0% 69.97% 12ms 3.60% hwloc_topology_load 0 0% 69.97% 11ms 3.30% __GI__dl_catch_exception 0 0% 69.97% 11ms 3.30% ___dlopen 0 0% 69.97% 11ms 3.30% _dl_catch_error 0 0% 69.97% 11ms 3.30% _dl_open 0 0% 69.97% 11ms 3.30% _dlerror_run 0 0% 69.97% 11ms 3.30% dl_open_worker 0 0% 69.97% 11ms 3.30% dlopen_doit 0 0% 69.97% 11ms 3.30% dlopen_implementation (inline) 0 0% 69.97% 11ms 3.30% hwloc_linux_get_tid_last_cpu_location 0 0% 69.97% 11ms 3.30% mca_base_framework_open 2ms 0.6% 70.57% 10ms 3.00% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 70.57% 10ms 3.00% VecAYPX 10ms 3.00% 73.57% 10ms 3.00% VecAYPX_Seq 0 0% 73.57% 10ms 3.00% mca_base_component_find 0 0% 73.57% 10ms 3.00% mca_base_component_repository_open 0 0% 73.57% 10ms 3.00% mca_base_framework_components_register 0 0% 73.57% 10ms 3.00% mca_base_framework_register 0 0% 73.57% 10ms 3.00% opal_stackframe_output 0 0% 73.57% 9ms 2.70% VecNorm 0 0% 73.57% 9ms 2.70% _dl_init 0 0% 73.57% 9ms 2.70% call_init (inline) 0 0% 73.57% 9ms 2.70% dl_open_worker_begin 0 0% 73.57% 8ms 2.40% VecNorm_Seq 0 0% 73.57% 7ms 2.10% _dl_start_user 2ms 0.6% 74.17% 6ms 1.80% CellLuoRudy1991FromCellML::GetIIonic 6ms 1.80% 75.98% 6ms 1.80% __GI___libc_read 0 0% 75.98% 5ms 1.50% VecDestroy 5ms 1.50% 77.48% 5ms 1.50% __ieee754_exp_fma 1ms 0.3% 77.78% 5ms 1.50% boost::serialization::singleton::get_instance 0 0% 77.78% 5ms 1.50% opal_hwloc_base_get_topology 0 0% 77.78% 5ms 1.50% orte_ess_base_proc_binding 0 0% 77.78% 4ms 1.20% KSPConvergedDefault 1ms 0.3% 78.08% 4ms 1.20% PetscHeaderDestroy_Private 0 0% 78.08% 4ms 1.20% VecAXPY 0 0% 78.08% 4ms 1.20% VecAXPY_Seq 0 0% 78.08% 4ms 1.20% VecDuplicate 0 0% 78.08% 4ms 1.20% _dl_lookup_symbol_x 0 0% 78.08% 4ms 1.20% _dl_map_object 0 0% 78.08% 4ms 1.20% _dl_map_object_deps 0 0% 78.08% 4ms 1.20% _dl_open_relocate_one_object (inline) 0 0% 78.08% 4ms 1.20% _dl_relocate_object 0 0% 78.08% 4ms 1.20% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 78.08% 4ms 1.20% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 78.08% 4ms 1.20% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 4ms 1.20% 79.28% 4ms 1.20% daxpy_ 0 0% 79.28% 4ms 1.20% mca_base_framework_components_open 0 0% 79.28% 4ms 1.20% mca_topo_base_dist_graph_neighbors_count 0 0% 79.28% 3ms 0.9% AbstractCardiacProblem::Initialise 0 0% 79.28% 3ms 0.9% BidomainSolver::SetupLinearSystem 0 0% 79.28% 3ms 0.9% CxxTest::RealWorldDescription::tearDown 0 0% 79.28% 3ms 0.9% PetscFinalize 0 0% 79.28% 3ms 0.9% PetscMemcpy (inline) 0 0% 79.28% 3ms 0.9% PetscSetup::tearDownWorld 0 0% 79.28% 3ms 0.9% PetscSetupUtils::CommonFinalize 0 0% 79.28% 3ms 0.9% VecDuplicate_Seq 3ms 0.9% 80.18% 3ms 0.9% [libchaste_heart.so] 0 0% 80.18% 3ms 0.9% __GI___libc_malloc 0 0% 80.18% 3ms 0.9% __ieee754_pow_fma 3ms 0.9% 81.08% 3ms 0.9% __memcpy_avx512_unaligned_erms 0 0% 81.08% 3ms 0.9% __pow 3ms 0.9% 81.98% 3ms 0.9% __strcmp_evex 1ms 0.3% 82.28% 3ms 0.9% _dl_runtime_resolve_xsavec 2ms 0.6% 82.88% 3ms 0.9% _int_malloc 0 0% 82.88% 3ms 0.9% ompi_mpi_finalize 0 0% 82.88% 3ms 0.9% openaux 3ms 0.9% 83.78% 3ms 0.9% std::_Rb_tree_increment 0 0% 83.78% 3ms 0.9% std::pow (inline) 0 0% 83.78% 2ms 0.6% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 83.78% 2ms 0.6% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.6% 84.38% 2ms 0.6% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 84.38% 2ms 0.6% DistributedTetrahedralMesh::ConstructFromMeshReader 1ms 0.3% 84.68% 2ms 0.6% PetscLogObjDestroyDefault 0 0% 84.68% 2ms 0.6% PetscMallocA 0 0% 84.68% 2ms 0.6% PetscMallocAlign 0 0% 84.68% 2ms 0.6% VecCopy 0 0% 84.68% 2ms 0.6% VecCopy_Seq (partial-inline) 0 0% 84.68% 2ms 0.6% VecCreate 0 0% 84.68% 2ms 0.6% VecCreate_Seq 1ms 0.3% 84.98% 2ms 0.6% VecCreate_Seq_Private 0 0% 84.98% 2ms 0.6% VecSetType 0 0% 84.98% 2ms 0.6% XOpenDisplay 0 0% 84.98% 2ms 0.6% [hwloc_gl.so] 0 0% 84.98% 2ms 0.6% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 84.98% 2ms 0.6% _XConnectXCB 2ms 0.6% 85.59% 2ms 0.6% __GI___clock_nanosleep 0 0% 85.59% 2ms 0.6% __GI___libc_free 0 0% 85.59% 2ms 0.6% __GI___nanosleep 0 0% 85.59% 2ms 0.6% __GI_exit 2ms 0.6% 86.19% 2ms 0.6% __GI_mprotect 0 0% 86.19% 2ms 0.6% __cxa_finalize 1ms 0.3% 86.49% 2ms 0.6% __posix_memalign 0 0% 86.49% 2ms 0.6% __run_exit_handlers 0 0% 86.49% 2ms 0.6% _dl_call_fini 0 0% 86.49% 2ms 0.6% _dl_fini 0 0% 86.49% 2ms 0.6% _dl_fixup 2ms 0.6% 87.09% 2ms 0.6% _dl_new_hash (inline) 0 0% 87.09% 2ms 0.6% _dl_protect_relro (inline) 2ms 0.6% 87.69% 2ms 0.6% _int_free 0 0% 87.69% 2ms 0.6% boost::numeric::ublas::c_vector::c_vector (inline) 0 0% 87.69% 2ms 0.6% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 87.69% 2ms 0.6% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 2ms 0.6% 88.29% 2ms 0.6% do_lookup_x 0 0% 88.29% 2ms 0.6% elf_dynamic_do_Rela (inline) 0 0% 88.29% 2ms 0.6% elf_machine_rela (inline) 2ms 0.6% 88.89% 2ms 0.6% log_inline (inline) 0 0% 88.89% 2ms 0.6% resolve_map (inline) 2ms 0.6% 89.49% 2ms 0.6% strcmp 0 0% 89.49% 2ms 0.6% usleep 0 0% 89.49% 2ms 0.6% xcb_connect_to_display_with_auth_info