File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110773ms, 91.52% of 121038ms total Dropped 1151 nodes (cum <= 605.19ms) flat flat% sum% cum cum% 0 0% 0% 121021ms 100% __libc_start_call_main 0 0% 0% 121021ms 100% __libc_start_main_impl 0 0% 0% 121021ms 100% _start 0 0% 0% 121018ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 121018ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 121018ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 121018ms 100% main 0 0% 0% 120983ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120983ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120983ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120983ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120983ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120983ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 119731ms 98.92% AbstractCardiacProblem::Solve 8ms 0.0066% 0.0091% 118971ms 98.29% AbstractDynamicLinearPdeSolver::Solve 6ms 0.005% 0.014% 66500ms 54.94% LinearSystem::Solve 1ms 0.00083% 0.015% 65911ms 54.45% KSPSolve 11ms 0.0091% 0.024% 65910ms 54.45% KSPSolve_Private 10ms 0.0083% 0.032% 65494ms 54.11% KSPSolve_SYMMLQ 229ms 0.19% 0.22% 43682ms 36.09% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.22% 37013ms 30.58% PCApply 3ms 0.0025% 0.23% 37006ms 30.57% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.23% 34406ms 28.43% KSPSolve_PREONLY (partial-inline) 1438ms 1.19% 1.41% 33986ms 28.08% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 5ms 0.0041% 1.42% 33190ms 27.42% MatSolve 0 0% 1.42% 33190ms 27.42% PCApply_ICC 32720ms 27.03% 28.45% 33185ms 27.42% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.0017% 28.45% 32034ms 26.47% KSP_PCApply.lto_priv.18 6942ms 5.74% 34.19% 29481ms 24.36% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0066% 34.20% 22369ms 18.48% MatMult 216ms 0.18% 34.37% 22361ms 18.47% MatMult_SeqAIJ (partial-inline) 21860ms 18.06% 52.43% 22360ms 18.47% MatMult_SeqAIJ_Inode (inline) 1952ms 1.61% 54.05% 14974ms 12.37% CardiacNewtonSolver::Solve 308ms 0.25% 54.30% 8803ms 7.27% AbstractCardiacTissue::UpdateCaches (inline) 4595ms 3.80% 58.10% 8771ms 7.25% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1458ms 1.20% 59.30% 8289ms 6.85% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2016ms 1.67% 60.97% 8277ms 6.84% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1040ms 0.86% 61.83% 7715ms 6.37% BidomainSolver::SetupLinearSystem 0 0% 61.83% 7093ms 5.86% KSP_PCApply (partial-inline) 6559ms 5.42% 67.25% 6559ms 5.42% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 2ms 0.0017% 67.25% 6452ms 5.33% KSPConvergedDefault 3851ms 3.18% 70.43% 3901ms 3.22% __ieee754_log_fma 0 0% 70.43% 3822ms 3.16% boost::numeric::ublas::norm_inf (inline) 2583ms 2.13% 72.56% 3822ms 3.16% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.56% 3822ms 3.16% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.56% 3822ms 3.16% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0074% 72.57% 3546ms 2.93% MatNullSpaceRemove 3159ms 2.61% 75.18% 3159ms 2.61% __memcpy_avx_unaligned_erms 0 0% 75.18% 3120ms 2.58% PetscMemcpy (inline) 1763ms 1.46% 76.64% 2904ms 2.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2859ms 2.36% 79.00% 2859ms 2.36% ddot_ 33ms 0.027% 79.03% 2706ms 2.24% std::pow (inline) 19ms 0.016% 79.04% 2689ms 2.22% VecCopy 6ms 0.005% 79.05% 2668ms 2.20% VecCopy_Seq (partial-inline) 365ms 0.3% 79.35% 2665ms 2.20% __pow 14ms 0.012% 79.36% 2568ms 2.12% VecAXPY 4ms 0.0033% 79.36% 2554ms 2.11% VecAXPY_Seq 2539ms 2.10% 81.46% 2539ms 2.10% daxpy_ 5ms 0.0041% 81.47% 2322ms 1.92% VecDot 0 0% 81.47% 2317ms 1.91% VecDot_Seq 6ms 0.005% 81.47% 2317ms 1.91% VecXDot_Seq_Private.constprop.0 311ms 0.26% 81.73% 2288ms 1.89% __ieee754_pow_fma 1ms 0.00083% 81.73% 2078ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00083% 81.73% 1995ms 1.65% VecMDot 5ms 0.0041% 81.73% 1994ms 1.65% VecMXDot_Private 1980ms 1.64% 83.37% 1986ms 1.64% VecMDot_Seq 34ms 0.028% 83.40% 1746ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1556ms 1.29% 84.68% 1556ms 1.29% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 12ms 0.0099% 84.69% 1542ms 1.27% VecMAXPY 1521ms 1.26% 85.95% 1530ms 1.26% VecMAXPY_Seq 1404ms 1.16% 87.11% 1444ms 1.19% exp_inline (inline) 0 0% 87.11% 1422ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1144ms 0.95% 88.05% 1144ms 0.95% __memset_avx2_unaligned_erms 0 0% 88.05% 1144ms 0.95% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.05% 1144ms 0.95% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.05% 1144ms 0.95% boost_numeric_ublas_abs (inline) 1144ms 0.95% 89.00% 1144ms 0.95% std::abs (inline) 8ms 0.0066% 89.01% 1136ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 89.01% 1130ms 0.93% PetscMemzero (inline) 236ms 0.19% 89.20% 1122ms 0.93% boost::numeric::ublas::indexing_matrix_assign 3ms 0.0025% 89.20% 1117ms 0.92% KSP_RemoveNullSpace (inline) 0 0% 89.20% 1104ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 89.20% 1104ms 0.91% CuboidMeshConstructor::Construct 2ms 0.0017% 89.21% 1104ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 770ms 0.64% 89.84% 1034ms 0.85% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.84% 999ms 0.83% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 89.84% 999ms 0.83% Element::Element 3ms 0.0025% 89.85% 987ms 0.82% VecDuplicate 2ms 0.0017% 89.85% 943ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 9ms 0.0074% 89.86% 888ms 0.73% VecScale 4ms 0.0033% 89.86% 879ms 0.73% VecScale_Seq 872ms 0.72% 90.58% 872ms 0.72% dscal_ 5ms 0.0041% 90.58% 867ms 0.72% BidomainAssembler::ComputeMatrixTerm 866ms 0.72% 91.30% 866ms 0.72% [libchaste_heart.so] 1ms 0.00083% 91.30% 840ms 0.69% VecNorm 1ms 0.00083% 91.30% 828ms 0.68% VecNorm_Seq 5ms 0.0041% 91.30% 824ms 0.68% boost::numeric::ublas::c_matrix::c_matrix (inline) 18ms 0.015% 91.32% 814ms 0.67% PetscMallocA 7ms 0.0058% 91.33% 796ms 0.66% PetscMallocAlign (partial-inline) 1ms 0.00083% 91.33% 754ms 0.62% AbstractBidomainSolver::FinaliseLinearSystem 230ms 0.19% 91.52% 751ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 4ms 0.0033% 91.52% 703ms 0.58% BidomainProblem::WriteOneStep 0 0% 91.52% 656ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)