File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 4347ms, 89.13% of 4877ms total Dropped 425 nodes (cum <= 24.39ms) flat flat% sum% cum cum% 0 0% 0% 4870ms 99.86% __libc_start_call_main 0 0% 0% 4870ms 99.86% __libc_start_main_impl 0 0% 0% 4870ms 99.86% _start 0 0% 0% 4867ms 99.79% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4867ms 99.79% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4867ms 99.79% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4867ms 99.79% main 0 0% 0% 4834ms 99.12% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4834ms 99.12% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4834ms 99.12% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.021% 0.021% 4827ms 98.97% AbstractCardiacProblem::Solve 1ms 0.021% 0.041% 4819ms 98.81% AbstractDynamicLinearPdeSolver::Solve 16ms 0.33% 0.37% 2269ms 46.52% AbstractCardiacTissue::SolveCellSystems 1ms 0.021% 0.39% 2090ms 42.85% LinearSystem::Solve 0 0% 0.39% 2049ms 42.01% KSPSolve 1ms 0.021% 0.41% 2049ms 42.01% KSPSolve_Private 0 0% 0.41% 2007ms 41.15% KSPSolve_SYMMLQ 27ms 0.55% 0.96% 1274ms 26.12% AbstractCardiacCell::ComputeExceptVoltage 25ms 0.51% 1.48% 1117ms 22.90% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.041% 1.52% 1032ms 21.16% PCApply 0 0% 1.52% 1024ms 21.00% PCApply_BJacobi_Singleblock 4ms 0.082% 1.60% 1001ms 20.52% MatMult 9ms 0.18% 1.78% 986ms 20.22% MatMult_SeqAIJ (partial-inline) 971ms 19.91% 21.69% 983ms 20.16% MatMult_SeqAIJ_Inode (inline) 103ms 2.11% 23.81% 954ms 19.56% EulerIvpOdeSolver::CalculateNextYValue 0 0% 23.81% 890ms 18.25% KSPSolve_PREONLY (partial-inline) 2ms 0.041% 23.85% 851ms 17.45% MatSolve 0 0% 23.85% 851ms 17.45% PCApply_ICC 843ms 17.29% 41.13% 845ms 17.33% MatSolve_SeqSBAIJ_1_NaturalOrdering 268ms 5.50% 46.63% 840ms 17.22% CellLuoRudy1991FromCellML::EvaluateYDerivatives 24ms 0.49% 47.12% 784ms 16.08% AbstractCardiacTissue::UpdateCaches (inline) 331ms 6.79% 53.91% 738ms 15.13% CellLuoRudy1991FromCellML::GetIIonic 0 0% 53.91% 670ms 13.74% KSP_PCApply.lto_priv.18 222ms 4.55% 58.46% 643ms 13.18% __GI___exp 1ms 0.021% 58.48% 460ms 9.43% KSPConvergedDefault 1ms 0.021% 58.50% 428ms 8.78% KSP_PCApply (partial-inline) 51ms 1.05% 59.54% 426ms 8.73% BidomainSolver::SetupLinearSystem 346ms 7.09% 66.64% 346ms 7.09% __ieee754_exp_fma 1ms 0.021% 66.66% 220ms 4.51% std::pow (inline) 20ms 0.41% 67.07% 218ms 4.47% __pow 16ms 0.33% 67.40% 196ms 4.02% __ieee754_pow_fma 113ms 2.32% 69.71% 152ms 3.12% CellLuoRudy1991FromCellML::VerifyStateVariables 142ms 2.91% 72.63% 142ms 2.91% [libchaste_heart.so] 1ms 0.021% 72.65% 114ms 2.34% MatNullSpaceRemove 114ms 2.34% 74.98% 114ms 2.34% log_inline (inline) 1ms 0.021% 75.01% 98ms 2.01% VecDuplicate 88ms 1.80% 76.81% 88ms 1.80% ddot_ 84ms 1.72% 78.53% 84ms 1.72% [libm.so.6] 28ms 0.57% 79.11% 78ms 1.60% TimeStepper::TimeStepper 26ms 0.53% 79.64% 69ms 1.41% MPI_Wtime 0 0% 79.64% 67ms 1.37% VecMDot 3ms 0.062% 79.70% 67ms 1.37% VecMXDot_Private 64ms 1.31% 81.01% 66ms 1.35% exp_inline (inline) 2ms 0.041% 81.05% 62ms 1.27% VecNorm 0 0% 81.05% 59ms 1.21% VecDot 55ms 1.13% 82.18% 55ms 1.13% TimeStepper::CalculateNextTime 0 0% 82.18% 55ms 1.13% VecNorm_Seq 11ms 0.23% 82.41% 52ms 1.07% PetscLogEventBeginDefault 0 0% 82.41% 52ms 1.07% VecDot_Seq 0 0% 82.41% 52ms 1.07% VecXDot_Seq_Private.constprop.0 26ms 0.53% 82.94% 51ms 1.05% AbstractOneStepIvpOdeSolver::Solve 3ms 0.062% 83.00% 50ms 1.03% VecDuplicate_MPI 49ms 1.00% 84.01% 49ms 1.00% VecMDot_Seq 3ms 0.062% 84.07% 48ms 0.98% VecCreate 8ms 0.16% 84.23% 47ms 0.96% VecCopy 1ms 0.021% 84.25% 47ms 0.96% VecDuplicate_Seq 8ms 0.16% 84.42% 46ms 0.94% PetscLogEventEndDefault 2ms 0.041% 84.46% 46ms 0.94% VecMAXPY 1ms 0.021% 84.48% 45ms 0.92% VecDestroy 41ms 0.84% 85.32% 41ms 0.84% [[vdso]] 0 0% 85.32% 41ms 0.84% __GI___clock_gettime 8ms 0.16% 85.48% 40ms 0.82% PetscMallocA 2ms 0.041% 85.52% 38ms 0.78% VecAXPY 0 0% 85.52% 38ms 0.78% VecNorm_MPI 0 0% 85.52% 38ms 0.78% VecNorm_MPI_Default.constprop.0 38ms 0.78% 86.30% 38ms 0.78% __ieee754_log_fma 8ms 0.16% 86.47% 37ms 0.76% AbstractCardiacCell::SetVoltage (partial-inline) 34ms 0.7% 87.16% 34ms 0.7% [libchaste_ode.so] 2ms 0.041% 87.21% 32ms 0.66% PetscMallocAlign 0 0% 87.21% 29ms 0.59% CxxTest::RealWorldDescription::setUp 0 0% 87.21% 29ms 0.59% PetscInitialize 0 0% 87.21% 29ms 0.59% PetscSetup::setUpWorld 0 0% 87.21% 29ms 0.59% PetscSetupUtils::CommonSetup 0 0% 87.21% 29ms 0.59% PetscSetupUtils::InitialisePetsc 0 0% 87.21% 28ms 0.57% PMPI_Init_thread 25ms 0.51% 87.72% 28ms 0.57% VecMAXPY_Seq 0 0% 87.72% 28ms 0.57% ompi_mpi_init 10ms 0.21% 87.92% 27ms 0.55% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 87.92% 27ms 0.55% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.021% 87.94% 27ms 0.55% VecSetType 15ms 0.31% 88.25% 26ms 0.53% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.021% 88.27% 26ms 0.53% PetscHeaderDestroy_Private 0 0% 88.27% 26ms 0.53% VecAXPY_Seq 10ms 0.21% 88.48% 26ms 0.53% __GI___libc_malloc 26ms 0.53% 89.01% 26ms 0.53% daxpy_ 4ms 0.082% 89.09% 25ms 0.51% 0 0% 89.09% 25ms 0.51% PetscMemcpy (inline) 2ms 0.041% 89.13% 25ms 0.51% __posix_memalign