File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3642ms, 85.57% of 4256ms total Dropped 503 nodes (cum <= 21.28ms) flat flat% sum% cum cum% 0 0% 0% 4248ms 99.81% __libc_start_call_main 0 0% 0% 4248ms 99.81% __libc_start_main_impl 0 0% 0% 4248ms 99.81% _start 0 0% 0% 4245ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4245ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4245ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4245ms 99.74% main 0 0% 0% 4199ms 98.66% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4199ms 98.66% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4199ms 98.66% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4192ms 98.50% AbstractCardiacProblem::Solve 4ms 0.094% 0.12% 4180ms 98.21% AbstractDynamicLinearPdeSolver::Solve 15ms 0.35% 0.47% 2232ms 52.44% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.49% 1589ms 37.34% LinearSystem::Solve 0 0% 0.49% 1546ms 36.33% KSPSolve 3ms 0.07% 0.56% 1546ms 36.33% KSPSolve_Private 2ms 0.047% 0.61% 1503ms 35.31% KSPSolve_SYMMLQ 32ms 0.75% 1.36% 1271ms 29.86% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.54% 1.90% 1096ms 25.75% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.07% 1.97% 928ms 21.80% PCApply 0 0% 1.97% 917ms 21.55% PCApply_BJacobi_Singleblock 59ms 1.39% 3.36% 911ms 21.41% EulerIvpOdeSolver::CalculateNextYValue 239ms 5.62% 8.98% 837ms 19.67% CellLuoRudy1991FromCellML::EvaluateYDerivatives 30ms 0.7% 9.68% 787ms 18.49% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 9.68% 782ms 18.37% KSPSolve_PREONLY 3ms 0.07% 9.75% 735ms 17.27% MatSolve 0 0% 9.75% 735ms 17.27% PCApply_ICC 355ms 8.34% 18.09% 728ms 17.11% __GI___exp 720ms 16.92% 35.01% 725ms 17.03% MatSolve_SeqSBAIJ_1_NaturalOrdering 295ms 6.93% 41.94% 719ms 16.89% CellLuoRudy1991FromCellML::GetIIonic 0 0% 41.94% 658ms 15.46% KSP_PCApply.lto_priv.18 0 0% 41.94% 447ms 10.50% MatMult 6ms 0.14% 42.08% 442ms 10.39% MatMult_SeqAIJ (partial-inline) 431ms 10.13% 52.21% 442ms 10.39% MatMult_SeqAIJ_Inode (inline) 0 0% 52.21% 368ms 8.65% KSPConvergedDefault 309ms 7.26% 59.47% 357ms 8.39% __ieee754_exp_fma 1ms 0.023% 59.49% 340ms 7.99% KSP_PCApply (partial-inline) 58ms 1.36% 60.86% 303ms 7.12% BidomainSolver::SetupLinearSystem 32ms 0.75% 61.61% 208ms 4.89% __pow 0 0% 61.61% 208ms 4.89% std::pow (inline) 15ms 0.35% 61.96% 175ms 4.11% __ieee754_pow_fma 0 0% 61.96% 126ms 2.96% MatNullSpaceRemove 53ms 1.25% 63.20% 114ms 2.68% CellLuoRudy1991FromCellML::VerifyStateVariables 99ms 2.33% 65.53% 99ms 2.33% log_inline (inline) 20ms 0.47% 66.00% 95ms 2.23% MPI_Wtime 0 0% 66.00% 79ms 1.86% VecMDot 1ms 0.023% 66.02% 79ms 1.86% VecMXDot_Private 34ms 0.8% 66.82% 78ms 1.83% TimeStepper::TimeStepper 0 0% 66.82% 76ms 1.79% VecDuplicate 3ms 0.07% 66.89% 75ms 1.76% __GI___clock_gettime 74ms 1.74% 68.63% 74ms 1.74% ddot_ 72ms 1.69% 70.32% 72ms 1.69% [[vdso]] 9ms 0.21% 70.54% 62ms 1.46% PetscLogEventBeginDefault 13ms 0.31% 70.84% 62ms 1.46% PetscLogEventEndDefault 1ms 0.023% 70.86% 60ms 1.41% VecDot 59ms 1.39% 72.25% 60ms 1.41% VecMDot_Seq 1ms 0.023% 72.27% 59ms 1.39% VecDestroy 59ms 1.39% 73.66% 59ms 1.39% __ieee754_log_fma 54ms 1.27% 74.93% 56ms 1.32% exp_inline (inline) 0 0% 74.93% 55ms 1.29% KSP_RemoveNullSpace (inline) 4ms 0.094% 75.02% 52ms 1.22% VecCopy 2ms 0.047% 75.07% 49ms 1.15% VecNorm 0 0% 75.07% 48ms 1.13% VecDot_Seq 1ms 0.023% 75.09% 48ms 1.13% VecXDot_Seq_Private.constprop.0 3ms 0.07% 75.16% 47ms 1.10% VecMAXPY 10ms 0.23% 75.40% 46ms 1.08% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 75.40% 45ms 1.06% AbstractBidomainSolver::FinaliseLinearSystem 6ms 0.14% 75.54% 44ms 1.03% AbstractBidomainSolver::CheckCompatibilityCondition 43ms 1.01% 76.55% 43ms 1.01% TimeStepper::CalculateNextTime 2ms 0.047% 76.60% 43ms 1.01% VecAXPY 2ms 0.047% 76.64% 43ms 1.01% VecDuplicate_MPI 43ms 1.01% 77.66% 43ms 1.01% [libchaste_heart.so] 0 0% 77.66% 41ms 0.96% CxxTest::RealWorldDescription::setUp 0 0% 77.66% 41ms 0.96% PetscInitialize 0 0% 77.66% 41ms 0.96% PetscSetup::setUpWorld 0 0% 77.66% 41ms 0.96% PetscSetupUtils::CommonSetup 0 0% 77.66% 41ms 0.96% PetscSetupUtils::InitialisePetsc 0 0% 77.66% 41ms 0.96% VecNorm_Seq 30ms 0.7% 78.36% 41ms 0.96% top12 (inline) 0 0% 78.36% 40ms 0.94% PMPI_Init_thread 0 0% 78.36% 40ms 0.94% ompi_mpi_init 3ms 0.07% 78.43% 38ms 0.89% VecCreate 36ms 0.85% 79.28% 36ms 0.85% DistributedVector::Iterator::operator!= 36ms 0.85% 80.12% 36ms 0.85% __memcpy_avx_unaligned_erms 27ms 0.63% 80.76% 35ms 0.82% AbstractOneStepIvpOdeSolver::Solve 3ms 0.07% 80.83% 33ms 0.78% 15ms 0.35% 81.18% 33ms 0.78% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.023% 81.20% 33ms 0.78% VecDuplicate_Seq 21ms 0.49% 81.70% 31ms 0.73% AbstractParameterisedSystem::GetAnyVariable 29ms 0.68% 82.38% 30ms 0.7% VecMAXPY_Seq 26ms 0.61% 82.99% 29ms 0.68% AbstractParameterisedSystem::SetAnyVariable 5ms 0.12% 83.11% 28ms 0.66% PetscMallocA 0 0% 83.11% 28ms 0.66% VecNorm_MPI 0 0% 83.11% 28ms 0.66% VecNorm_MPI_Default.constprop.0 17ms 0.4% 83.51% 27ms 0.63% TimeStepper::AdvanceOneTimeStep 2ms 0.047% 83.55% 27ms 0.63% VecAXPY_Seq 7ms 0.16% 83.72% 26ms 0.61% AbstractCardiacCell::GetVoltage (partial-inline) 21ms 0.49% 84.21% 26ms 0.61% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 84.21% 26ms 0.61% PetscMemcpy (inline) 25ms 0.59% 84.80% 25ms 0.59% asuint64 (inline) 1ms 0.023% 84.82% 24ms 0.56% PetscHeaderDestroy_Private 24ms 0.56% 85.39% 24ms 0.56% daxpy_ 0 0% 85.39% 24ms 0.56% orte_init 4ms 0.094% 85.48% 23ms 0.54% PetscMallocAlign 0 0% 85.48% 23ms 0.54% VecCopy_Seq (partial-inline) 1ms 0.023% 85.50% 23ms 0.54% VecCreate_MPI_Private 3ms 0.07% 85.57% 23ms 0.54% __GI___libc_free