File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3692ms, 86.99% of 4244ms total Dropped 456 nodes (cum <= 21.22ms) flat flat% sum% cum cum% 0 0% 0% 4237ms 99.84% __libc_start_call_main 0 0% 0% 4237ms 99.84% __libc_start_main_impl 0 0% 0% 4237ms 99.84% _start 0 0% 0% 4234ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4234ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4234ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4234ms 99.76% main 0 0% 0% 4188ms 98.68% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4188ms 98.68% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4188ms 98.68% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4181ms 98.52% AbstractCardiacProblem::Solve 2ms 0.047% 0.071% 4166ms 98.16% AbstractDynamicLinearPdeSolver::Solve 20ms 0.47% 0.54% 2289ms 53.93% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.57% 1536ms 36.19% LinearSystem::Solve 2ms 0.047% 0.61% 1478ms 34.83% KSPSolve 5ms 0.12% 0.73% 1478ms 34.83% KSPSolve_Private 2ms 0.047% 0.78% 1434ms 33.79% KSPSolve_SYMMLQ 31ms 0.73% 1.51% 1215ms 28.63% AbstractCardiacCell::ComputeExceptVoltage 24ms 0.57% 2.07% 1043ms 24.58% AbstractOneStepIvpOdeSolver::InternalSolve 38ms 0.9% 2.97% 884ms 20.83% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.071% 3.04% 863ms 20.33% PCApply 60ms 1.41% 4.45% 859ms 20.24% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.071% 4.52% 852ms 20.08% PCApply_BJacobi_Singleblock 296ms 6.97% 11.50% 799ms 18.83% CellLuoRudy1991FromCellML::GetIIonic 207ms 4.88% 16.38% 787ms 18.54% CellLuoRudy1991FromCellML::EvaluateYDerivatives 372ms 8.77% 25.14% 769ms 18.12% __GI___exp 0 0% 25.14% 726ms 17.11% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 25.19% 676ms 15.93% MatSolve 0 0% 25.19% 676ms 15.93% PCApply_ICC 665ms 15.67% 40.86% 670ms 15.79% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.86% 621ms 14.63% KSP_PCApply.lto_priv.18 3ms 0.071% 40.93% 441ms 10.39% MatMult 14ms 0.33% 41.26% 433ms 10.20% MatMult_SeqAIJ (partial-inline) 418ms 9.85% 51.11% 432ms 10.18% MatMult_SeqAIJ_Inode (inline) 317ms 7.47% 58.58% 378ms 8.91% __ieee754_exp_fma 2ms 0.047% 58.62% 327ms 7.70% KSPConvergedDefault 0 0% 58.62% 311ms 7.33% KSP_PCApply (partial-inline) 66ms 1.56% 60.18% 299ms 7.05% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.20% 263ms 6.20% std::pow (inline) 26ms 0.61% 60.82% 262ms 6.17% __pow 26ms 0.61% 61.43% 236ms 5.56% __ieee754_pow_fma 122ms 2.87% 64.30% 122ms 2.87% log_inline (inline) 1ms 0.024% 64.33% 116ms 2.73% MatNullSpaceRemove 64ms 1.51% 65.83% 115ms 2.71% CellLuoRudy1991FromCellML::VerifyStateVariables 39ms 0.92% 66.75% 99ms 2.33% MPI_Wtime 0 0% 66.75% 86ms 2.03% VecDuplicate 79ms 1.86% 68.61% 79ms 1.86% ddot_ 70ms 1.65% 70.26% 73ms 1.72% exp_inline (inline) 29ms 0.68% 70.95% 66ms 1.56% TimeStepper::TimeStepper 0 0% 70.95% 65ms 1.53% VecMDot 7ms 0.16% 71.11% 65ms 1.53% VecMXDot_Private 7ms 0.16% 71.28% 62ms 1.46% PetscLogEventBeginDefault 1ms 0.024% 71.30% 60ms 1.41% __GI___clock_gettime 59ms 1.39% 72.69% 59ms 1.39% [[vdso]] 11ms 0.26% 72.95% 58ms 1.37% PetscLogEventEndDefault 49ms 1.15% 74.10% 58ms 1.37% top12 (inline) 0 0% 74.10% 57ms 1.34% VecDot 4ms 0.094% 74.20% 56ms 1.32% VecCopy 0 0% 74.20% 55ms 1.30% VecDot_Seq 2ms 0.047% 74.25% 55ms 1.30% VecDuplicate_MPI 0 0% 74.25% 55ms 1.30% VecXDot_Seq_Private.constprop.0 4ms 0.094% 74.34% 54ms 1.27% VecNorm 15ms 0.35% 74.69% 52ms 1.23% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 74.72% 50ms 1.18% VecMAXPY 49ms 1.15% 75.87% 49ms 1.15% [libchaste_heart.so] 46ms 1.08% 76.96% 46ms 1.08% TimeStepper::CalculateNextTime 1ms 0.024% 76.98% 46ms 1.08% VecNorm_Seq 46ms 1.08% 78.06% 46ms 1.08% __memcpy_avx_unaligned_erms 44ms 1.04% 79.10% 45ms 1.06% VecMDot_Seq 0 0% 79.10% 41ms 0.97% CxxTest::RealWorldDescription::setUp 0 0% 79.10% 41ms 0.97% KSP_RemoveNullSpace (inline) 0 0% 79.10% 41ms 0.97% PetscSetup::setUpWorld 0 0% 79.10% 41ms 0.97% PetscSetupUtils::CommonSetup 0 0% 79.10% 40ms 0.94% PMPI_Init_thread 0 0% 79.10% 40ms 0.94% PetscInitialize 0 0% 79.10% 40ms 0.94% PetscSetupUtils::InitialisePetsc 2ms 0.047% 79.15% 40ms 0.94% VecAXPY 0 0% 79.15% 40ms 0.94% ompi_mpi_init 1ms 0.024% 79.17% 39ms 0.92% VecDestroy 0 0% 79.17% 37ms 0.87% VecNorm_MPI 0 0% 79.17% 37ms 0.87% VecNorm_MPI_Default.constprop.0 24ms 0.57% 79.74% 35ms 0.82% AbstractOneStepIvpOdeSolver::Solve 10ms 0.24% 79.97% 34ms 0.8% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 79.97% 34ms 0.8% AbstractBidomainSolver::FinaliseLinearSystem 25ms 0.59% 80.56% 34ms 0.8% AbstractParameterisedSystem::GetAnyVariable 7ms 0.16% 80.73% 34ms 0.8% PetscMallocA 0 0% 80.73% 34ms 0.8% PetscMemcpy (inline) 9ms 0.21% 80.94% 33ms 0.78% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 26ms 0.61% 81.55% 33ms 0.78% AbstractParameterisedSystem::SetAnyVariable 21ms 0.49% 82.05% 33ms 0.78% TimeStepper::AdvanceOneTimeStep 1ms 0.024% 82.07% 32ms 0.75% VecCreate 0 0% 82.07% 31ms 0.73% VecDuplicate_Seq 1ms 0.024% 82.09% 30ms 0.71% 30ms 0.71% 82.80% 30ms 0.71% asuint64 (inline) 27ms 0.64% 83.44% 28ms 0.66% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.094% 83.53% 28ms 0.66% VecCreate_MPI_Private 1ms 0.024% 83.55% 27ms 0.64% PetscMallocAlign 0 0% 83.55% 26ms 0.61% VecAXPY_Seq 0 0% 83.55% 26ms 0.61% VecCopy_Seq (partial-inline) 23ms 0.54% 84.10% 26ms 0.61% VecMAXPY_Seq 25ms 0.59% 84.68% 25ms 0.59% RegularStimulus::GetStimulus 9ms 0.21% 84.90% 24ms 0.57% AbstractCardiacCell::GetVoltage (partial-inline) 24ms 0.57% 85.46% 24ms 0.57% DistributedVector::Iterator::operator!= 24ms 0.57% 86.03% 24ms 0.57% __ieee754_log_fma 24ms 0.57% 86.59% 24ms 0.57% daxpy_ 0 0% 86.59% 24ms 0.57% orte_init 1ms 0.024% 86.62% 23ms 0.54% VecScale 16ms 0.38% 86.99% 22ms 0.52% std::__cxx11::basic_string::basic_string