File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3672ms, 86.00% of 4270ms total Dropped 464 nodes (cum <= 21.35ms) flat flat% sum% cum cum% 0 0% 0% 4262ms 99.81% __libc_start_call_main 0 0% 0% 4262ms 99.81% __libc_start_main_impl 0 0% 0% 4262ms 99.81% _start 0 0% 0% 4259ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4259ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4259ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4259ms 99.74% main 0 0% 0% 4219ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4219ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4219ms 98.81% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4213ms 98.67% AbstractCardiacProblem::Solve 1ms 0.023% 0.023% 4193ms 98.20% AbstractDynamicLinearPdeSolver::Solve 21ms 0.49% 0.52% 2232ms 52.27% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.54% 1495ms 35.01% LinearSystem::Solve 0 0% 0.54% 1445ms 33.84% KSPSolve 6ms 0.14% 0.68% 1445ms 33.84% KSPSolve_Private 1ms 0.023% 0.7% 1393ms 32.62% KSPSolve_SYMMLQ 22ms 0.52% 1.22% 1255ms 29.39% AbstractCardiacCell::ComputeExceptVoltage 25ms 0.59% 1.80% 1052ms 24.64% AbstractOneStepIvpOdeSolver::InternalSolve 50ms 1.17% 2.97% 861ms 20.16% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.094% 3.07% 829ms 19.41% PCApply 0 0% 3.07% 819ms 19.18% PCApply_BJacobi_Singleblock 32ms 0.75% 3.82% 807ms 18.90% AbstractCardiacTissue::UpdateCaches (inline) 201ms 4.71% 8.52% 804ms 18.83% CellLuoRudy1991FromCellML::EvaluateYDerivatives 384ms 8.99% 17.52% 771ms 18.06% __GI___exp 245ms 5.74% 23.26% 734ms 17.19% CellLuoRudy1991FromCellML::GetIIonic 0 0% 23.26% 691ms 16.18% KSPSolve_PREONLY (partial-inline) 1ms 0.023% 23.28% 645ms 15.11% PCApply_ICC 1ms 0.023% 23.30% 644ms 15.08% MatSolve 628ms 14.71% 38.01% 638ms 14.94% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1ms 0.023% 38.03% 554ms 12.97% KSP_PCApply.lto_priv.18 3ms 0.07% 38.10% 510ms 11.94% MatMult 11ms 0.26% 38.36% 497ms 11.64% MatMult_SeqAIJ (partial-inline) 484ms 11.33% 49.70% 497ms 11.64% MatMult_SeqAIJ_Inode (inline) 90ms 2.11% 51.80% 416ms 9.74% BidomainSolver::SetupLinearSystem 0 0% 51.80% 371ms 8.69% KSPConvergedDefault 309ms 7.24% 59.04% 370ms 8.67% __ieee754_exp_fma 0 0% 59.04% 357ms 8.36% KSP_PCApply (partial-inline) 1ms 0.023% 59.06% 233ms 5.46% std::pow (inline) 25ms 0.59% 59.65% 232ms 5.43% __pow 16ms 0.37% 60.02% 207ms 4.85% __ieee754_pow_fma 0 0% 60.02% 122ms 2.86% MatNullSpaceRemove 104ms 2.44% 62.46% 104ms 2.44% log_inline (inline) 0 0% 62.46% 99ms 2.32% VecDuplicate 53ms 1.24% 63.70% 91ms 2.13% CellLuoRudy1991FromCellML::VerifyStateVariables 85ms 1.99% 65.69% 85ms 1.99% ddot_ 34ms 0.8% 66.49% 84ms 1.97% TimeStepper::TimeStepper 0 0% 66.49% 84ms 1.97% VecMDot 2ms 0.047% 66.53% 84ms 1.97% VecMXDot_Private 78ms 1.83% 68.36% 83ms 1.94% exp_inline (inline) 26ms 0.61% 68.97% 82ms 1.92% MPI_Wtime 14ms 0.33% 69.30% 75ms 1.76% PetscLogEventBeginDefault 0 0% 69.30% 63ms 1.48% VecDot 1ms 0.023% 69.32% 61ms 1.43% VecDuplicate_MPI 59ms 1.38% 70.70% 59ms 1.38% [libchaste_heart.so] 14ms 0.33% 71.03% 58ms 1.36% PetscLogEventEndDefault 16ms 0.37% 71.41% 57ms 1.33% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 71.41% 57ms 1.33% VecDot_Seq 0 0% 71.41% 57ms 1.33% VecXDot_Seq_Private.constprop.0 56ms 1.31% 72.72% 56ms 1.31% TimeStepper::CalculateNextTime 0 0% 72.72% 56ms 1.31% VecDestroy 56ms 1.31% 74.03% 56ms 1.31% [[vdso]] 0 0% 74.03% 56ms 1.31% __GI___clock_gettime 51ms 1.19% 75.22% 53ms 1.24% VecMDot_Seq 38ms 0.89% 76.11% 51ms 1.19% AbstractOneStepIvpOdeSolver::Solve 3ms 0.07% 76.18% 47ms 1.10% VecCopy 1ms 0.023% 76.21% 47ms 1.10% VecNorm 39ms 0.91% 77.12% 46ms 1.08% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 7ms 0.16% 77.28% 46ms 1.08% PetscMallocA 44ms 1.03% 78.31% 45ms 1.05% __ieee754_log_fma 44ms 1.03% 79.34% 44ms 1.03% __memcpy_avx_unaligned_erms 0 0% 79.34% 43ms 1.01% AbstractBidomainSolver::FinaliseLinearSystem 8ms 0.19% 79.53% 41ms 0.96% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.047% 79.58% 41ms 0.96% VecAXPY 32ms 0.75% 80.33% 41ms 0.96% top12 (inline) 1ms 0.023% 80.35% 40ms 0.94% VecCreate 18ms 0.42% 80.77% 39ms 0.91% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.047% 80.82% 39ms 0.91% PetscMallocAlign 3ms 0.07% 80.89% 39ms 0.91% VecCreate_MPI_Private 39ms 0.91% 81.80% 39ms 0.91% asuint64 (inline) 0 0% 81.80% 38ms 0.89% VecDuplicate_Seq 4ms 0.094% 81.90% 38ms 0.89% VecMAXPY 37ms 0.87% 82.76% 37ms 0.87% DistributedVector::Stripe::operator[] (inline) 0 0% 82.76% 37ms 0.87% VecNorm_Seq 0 0% 82.76% 36ms 0.84% CxxTest::RealWorldDescription::setUp 0 0% 82.76% 36ms 0.84% PetscSetup::setUpWorld 0 0% 82.76% 36ms 0.84% PetscSetupUtils::CommonSetup 0 0% 82.76% 35ms 0.82% PMPI_Init_thread 0 0% 82.76% 35ms 0.82% PetscInitialize 0 0% 82.76% 35ms 0.82% PetscMemcpy (inline) 0 0% 82.76% 35ms 0.82% PetscSetupUtils::InitialisePetsc 0 0% 82.76% 35ms 0.82% ompi_mpi_init 28ms 0.66% 83.42% 34ms 0.8% AbstractParameterisedSystem::SetAnyVariable 0 0% 83.42% 29ms 0.68% 14ms 0.33% 83.75% 29ms 0.68% TimeStepper::AdvanceOneTimeStep 27ms 0.63% 84.38% 27ms 0.63% DistributedVector::Iterator::operator!= 13ms 0.3% 84.68% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 23ms 0.54% 85.22% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 0 0% 85.22% 25ms 0.59% orte_init 0 0% 85.22% 24ms 0.56% VecNorm_MPI 0 0% 85.22% 24ms 0.56% VecNorm_MPI_Default.constprop.0 1ms 0.023% 85.25% 23ms 0.54% KSP_RemoveNullSpace (inline) 5ms 0.12% 85.36% 23ms 0.54% PetscFreeAlign 1ms 0.023% 85.39% 23ms 0.54% PetscHeaderDestroy_Private 23ms 0.54% 85.93% 23ms 0.54% RegularStimulus::GetStimulus 1ms 0.023% 85.95% 23ms 0.54% VecAXPY_Seq 0 0% 85.95% 22ms 0.52% VecCopy_Seq (partial-inline) 2ms 0.047% 86.00% 22ms 0.52% __posix_memalign