File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12676ms, 84.92% of 14927ms total Dropped 747 nodes (cum <= 74.64ms) flat flat% sum% cum cum% 0 0% 0% 14918ms 99.94% __libc_start_call_main 0 0% 0% 14918ms 99.94% __libc_start_main_impl 0 0% 0% 14918ms 99.94% _start 0 0% 0% 14915ms 99.92% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14915ms 99.92% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14915ms 99.92% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14915ms 99.92% main 0 0% 0% 14876ms 99.66% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14876ms 99.66% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14876ms 99.66% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 0 0% 0% 14853ms 99.50% AbstractCardiacProblem::Solve 2ms 0.013% 0.013% 11402ms 76.39% AbstractDynamicLinearPdeSolver::Solve 72ms 0.48% 0.5% 9033ms 60.51% AbstractCardiacTissue::SolveCellSystems 87ms 0.58% 1.08% 5457ms 36.56% AbstractCardiacCell::ComputeExceptVoltage 143ms 0.96% 2.04% 4827ms 32.34% AbstractOneStepIvpOdeSolver::InternalSolve 149ms 1% 3.03% 4106ms 27.51% EulerIvpOdeSolver::CalculateNextYValue 934ms 6.26% 9.29% 3907ms 26.17% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1816ms 12.17% 21.46% 3573ms 23.94% __GI___exp 0 0% 21.46% 3397ms 22.76% MonodomainProblem::WriteOneStep 1ms 0.0067% 21.46% 3253ms 21.79% H5Dwrite 6ms 0.04% 21.50% 3251ms 21.78% Hdf5DataWriter::PutVector 3ms 0.02% 21.52% 3232ms 21.65% H5D__write 88ms 0.59% 22.11% 2887ms 19.34% AbstractCardiacTissue::UpdateCaches (inline) 820ms 5.49% 27.61% 2726ms 18.26% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.0067% 27.61% 1967ms 13.18% H5D__chunk_collective_write 16ms 0.11% 27.72% 1966ms 13.17% H5F_set_coll_metadata_reads 14ms 0.094% 27.82% 1737ms 11.64% H5FD_s3comms_uriencode 1375ms 9.21% 37.03% 1694ms 11.35% __ieee754_exp_fma 1ms 0.0067% 37.03% 1572ms 10.53% LinearSystem::Solve 1ms 0.0067% 37.04% 1440ms 9.65% KSPSolve 5ms 0.033% 37.07% 1439ms 9.64% KSPSolve_Private 0 0% 37.07% 1432ms 9.59% KSPSolve_CG 2ms 0.013% 37.09% 1367ms 9.16% H5F_block_write 58ms 0.39% 37.48% 1365ms 9.14% 3ms 0.02% 37.50% 1365ms 9.14% H5PB_write 3ms 0.02% 37.52% 1362ms 9.12% H5F__accum_write 0 0% 37.52% 1359ms 9.10% H5FD_write 5ms 0.033% 37.55% 1274ms 8.53% H5D__mpio_select_write 3ms 0.02% 37.57% 1154ms 7.73% PMPI_File_write_at_all 6ms 0.04% 37.61% 1145ms 7.67% H5D__chunk_cacheable 1115ms 7.47% 45.08% 1119ms 7.50% __GI_pwritev64 4ms 0.027% 45.11% 1009ms 6.76% std::pow (inline) 346ms 2.32% 47.42% 1006ms 6.74% H5S_select_iterate 98ms 0.66% 48.08% 1003ms 6.72% __pow 99ms 0.66% 48.74% 905ms 6.06% __ieee754_pow_fma 0 0% 48.74% 796ms 5.33% PCApply 2ms 0.013% 48.76% 792ms 5.31% PCApply_BJacobi_Singleblock 347ms 2.32% 51.08% 777ms 5.21% MonodomainSolver::SetupLinearSystem 1ms 0.0067% 51.09% 757ms 5.07% KSPSolve_PREONLY 0 0% 51.09% 756ms 5.06% MatSolve 750ms 5.02% 56.11% 756ms 5.06% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 56.11% 756ms 5.06% PCApply_ICC 93ms 0.62% 56.74% 681ms 4.56% H5D__chunk_set_sizes 4ms 0.027% 56.76% 612ms 4.10% MatMult 606ms 4.06% 60.82% 608ms 4.07% MatMult_SeqAIJ 0 0% 60.82% 573ms 3.84% KSP_PCApply.lto_priv.7 68ms 0.46% 61.28% 480ms 3.22% H5S_mpio_space_type 433ms 2.90% 64.18% 433ms 2.90% log_inline (inline) 213ms 1.43% 65.61% 416ms 2.79% CellLuoRudy1991FromCellML::VerifyStateVariables 334ms 2.24% 67.84% 343ms 2.30% exp_inline (inline) 2ms 0.013% 67.86% 294ms 1.97% KSPConvergedDefault 200ms 1.34% 69.20% 268ms 1.80% top12 (inline) 116ms 0.78% 69.97% 267ms 1.79% TimeStepper::TimeStepper 241ms 1.61% 71.59% 241ms 1.61% [libchaste_heart.so] 0 0% 71.59% 224ms 1.50% KSP_PCApply 47ms 0.31% 71.90% 201ms 1.35% __GI___libc_malloc 7ms 0.047% 71.95% 198ms 1.33% H5VM_chunk_index 146ms 0.98% 72.93% 185ms 1.24% _int_malloc 7ms 0.047% 72.98% 183ms 1.23% MPI_Type_free 10ms 0.067% 73.04% 182ms 1.22% ompi_datatype_destroy 10ms 0.067% 73.11% 170ms 1.14% ompi_datatype_create 54ms 0.36% 73.47% 168ms 1.13% AbstractCardiacCell::SetVoltage (partial-inline) 27ms 0.18% 73.65% 165ms 1.11% __GI___libc_free 161ms 1.08% 74.73% 161ms 1.08% ddot_ 158ms 1.06% 75.79% 158ms 1.06% asuint64 (inline) 156ms 1.05% 76.83% 156ms 1.05% TimeStepper::CalculateNextTime 8ms 0.054% 76.89% 156ms 1.05% ompi_info_register_framework_params 48ms 0.32% 77.21% 153ms 1.02% ompi_datatype_release_args 133ms 0.89% 78.10% 152ms 1.02% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 31ms 0.21% 78.31% 148ms 0.99% H5S_set_version 2ms 0.013% 78.32% 146ms 0.98% Hdf5DataWriter::PutUnlimitedVariable 58ms 0.39% 78.71% 138ms 0.92% _int_free 101ms 0.68% 79.39% 132ms 0.88% AbstractOneStepIvpOdeSolver::Solve 1ms 0.0067% 79.39% 130ms 0.87% PMPI_File_set_view 56ms 0.38% 79.77% 126ms 0.84% H5S_hyper_add_span_element 126ms 0.84% 80.61% 126ms 0.84% __memcpy_avx_unaligned_erms 55ms 0.37% 80.98% 121ms 0.81% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 33ms 0.22% 81.20% 117ms 0.78% H5VM_array_calc 115ms 0.77% 81.97% 115ms 0.77% __ieee754_log_fma 111ms 0.74% 82.72% 111ms 0.74% H5VM_chunk_index_scaled 0 0% 82.72% 111ms 0.74% VecNorm 2ms 0.013% 82.73% 107ms 0.72% VecNorm_Seq 84ms 0.56% 83.29% 101ms 0.68% AbstractParameterisedSystem::GetAnyVariable 0 0% 83.29% 98ms 0.66% VecDuplicate 6ms 0.04% 83.33% 98ms 0.66% VecDuplicate_MPI 0 0% 83.33% 97ms 0.65% VecTDot 0 0% 83.33% 96ms 0.64% VecTDot_Seq 0 0% 83.33% 96ms 0.64% VecXDot_Seq_Private.constprop.0 78ms 0.52% 83.85% 95ms 0.64% AbstractParameterisedSystem::SetAnyVariable 1ms 0.0067% 83.86% 89ms 0.6% PMPI_Type_create_resized 1ms 0.0067% 83.87% 88ms 0.59% ompi_datatype_duplicate 29ms 0.19% 84.06% 84ms 0.56% AbstractCardiacCell::GetVoltage (partial-inline) 3ms 0.02% 84.08% 83ms 0.56% opal_datatype_create_desc 82ms 0.55% 84.63% 82ms 0.55% H5VM_array_offset_pre 20ms 0.13% 84.77% 79ms 0.53% __libc_calloc 0 0% 84.77% 78ms 0.52% std::vector::_M_assign_aux (inline) 0 0% 84.77% 78ms 0.52% std::vector::assign (inline) 2ms 0.013% 84.78% 77ms 0.52% H5D__chunk_allocated 4ms 0.027% 84.81% 77ms 0.52% MPI_Type_contiguous 17ms 0.11% 84.92% 76ms 0.51% ompi_datatype_set_args