File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108623ms, 91.86% of 118252ms total Dropped 1132 nodes (cum <= 591.26ms) flat flat% sum% cum cum% 0 0% 0% 118240ms 100% __libc_start_call_main 0 0% 0% 118240ms 100% __libc_start_main_impl 0 0% 0% 118240ms 100% _start 0 0% 0% 118237ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118237ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118237ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118237ms 100% main 0 0% 0% 118203ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118203ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118203ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118203ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118203ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 118202ms 100% AbstractConvergenceTester::Converge 6ms 0.0051% 0.0051% 116984ms 98.93% AbstractCardiacProblem::Solve 11ms 0.0093% 0.014% 116268ms 98.32% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.017% 65000ms 54.97% LinearSystem::Solve 1ms 0.00085% 0.018% 64489ms 54.54% KSPSolve 19ms 0.016% 0.034% 64488ms 54.53% KSPSolve_Private 10ms 0.0085% 0.042% 64088ms 54.20% KSPSolve_SYMMLQ 204ms 0.17% 0.21% 42599ms 36.02% AbstractCardiacTissue::SolveCellSystems 6ms 0.0051% 0.22% 36798ms 31.12% PCApply 1ms 0.00085% 0.22% 36784ms 31.11% PCApply_BJacobi_Singleblock 1ms 0.00085% 0.22% 34380ms 29.07% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 33280ms 28.14% PCApply_ICC 4ms 0.0034% 0.23% 33278ms 28.14% MatSolve 32777ms 27.72% 27.94% 33274ms 28.14% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1407ms 1.19% 29.13% 32818ms 27.75% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 29.14% 31754ms 26.85% KSP_PCApply.lto_priv.18 6848ms 5.79% 34.93% 28299ms 23.93% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.0051% 34.93% 21538ms 18.21% MatMult 298ms 0.25% 35.18% 21532ms 18.21% MatMult_SeqAIJ (partial-inline) 21019ms 17.77% 52.96% 21529ms 18.21% MatMult_SeqAIJ_Inode (inline) 1985ms 1.68% 54.64% 14779ms 12.50% CardiacNewtonSolver::Solve 334ms 0.28% 54.92% 8916ms 7.54% AbstractCardiacTissue::UpdateCaches (inline) 4441ms 3.76% 58.68% 8659ms 7.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2055ms 1.74% 60.41% 8355ms 7.07% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1102ms 0.93% 61.35% 7658ms 6.48% BidomainSolver::SetupLinearSystem 997ms 0.84% 62.19% 7135ms 6.03% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 62.19% 7024ms 5.94% KSP_PCApply (partial-inline) 3ms 0.0025% 62.19% 6447ms 5.45% KSPConvergedDefault 5887ms 4.98% 67.17% 5887ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3926ms 3.32% 70.49% 3964ms 3.35% __ieee754_log_fma 0 0% 70.49% 3739ms 3.16% boost::numeric::ublas::norm_inf (inline) 2556ms 2.16% 72.65% 3739ms 3.16% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.65% 3739ms 3.16% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.65% 3739ms 3.16% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 11ms 0.0093% 72.66% 3257ms 2.75% MatNullSpaceRemove 3158ms 2.67% 75.33% 3158ms 2.67% __memcpy_avx_unaligned_erms 0 0% 75.33% 3126ms 2.64% PetscMemcpy (inline) 28ms 0.024% 75.36% 3028ms 2.56% std::pow (inline) 384ms 0.32% 75.68% 2998ms 2.54% __pow 1769ms 1.50% 77.18% 2942ms 2.49% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 17ms 0.014% 77.19% 2660ms 2.25% VecCopy 2657ms 2.25% 79.44% 2657ms 2.25% ddot_ 1ms 0.00085% 79.44% 2635ms 2.23% VecCopy_Seq (partial-inline) 353ms 0.3% 79.74% 2601ms 2.20% __ieee754_pow_fma 28ms 0.024% 79.76% 2348ms 1.99% VecAXPY 13ms 0.011% 79.77% 2320ms 1.96% VecAXPY_Seq 2294ms 1.94% 81.71% 2294ms 1.94% daxpy_ 4ms 0.0034% 81.72% 2127ms 1.80% VecDot 0 0% 81.72% 2123ms 1.80% VecDot_Seq 1ms 0.00085% 81.72% 2123ms 1.80% VecXDot_Seq_Private.constprop.0 4ms 0.0034% 81.72% 2041ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.72% 1812ms 1.53% VecMDot 12ms 0.01% 81.73% 1810ms 1.53% VecMXDot_Private 1790ms 1.51% 83.25% 1795ms 1.52% VecMDot_Seq 23ms 0.019% 83.26% 1693ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1455ms 1.23% 84.49% 1522ms 1.29% exp_inline (inline) 1478ms 1.25% 85.74% 1478ms 1.25% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 6ms 0.0051% 85.75% 1434ms 1.21% VecMAXPY 1424ms 1.20% 86.95% 1428ms 1.21% VecMAXPY_Seq 0 0% 86.95% 1398ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 12ms 0.01% 86.96% 1102ms 0.93% boost::numeric::ublas::matrix_assign (inline) 227ms 0.19% 87.16% 1083ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.16% 1075ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.16% 1075ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.16% 1075ms 0.91% boost_numeric_ublas_abs (inline) 1075ms 0.91% 88.07% 1075ms 0.91% std::abs (inline) 0 0% 88.07% 1069ms 0.9% CuboidMeshConstructor::Construct 0 0% 88.07% 1068ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 88.07% 1068ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 800ms 0.68% 88.74% 1041ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1023ms 0.87% 89.61% 1023ms 0.87% __memset_avx2_unaligned_erms 0 0% 89.61% 1012ms 0.86% PetscMemzero (inline) 1ms 0.00085% 89.61% 961ms 0.81% Element::Element 1ms 0.00085% 89.61% 958ms 0.81% AbstractTetrahedralElement::CalculateJacobian 4ms 0.0034% 89.61% 917ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 1ms 0.00085% 89.61% 902ms 0.76% VecDuplicate 12ms 0.01% 89.62% 875ms 0.74% VecScale 3ms 0.0025% 89.63% 863ms 0.73% VecScale_Seq 857ms 0.72% 90.35% 857ms 0.72% dscal_ 851ms 0.72% 91.07% 851ms 0.72% [libchaste_heart.so] 6ms 0.0051% 91.08% 836ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 6ms 0.0051% 91.08% 826ms 0.7% BidomainAssembler::ComputeMatrixTerm 3ms 0.0025% 91.08% 759ms 0.64% VecNorm 15ms 0.013% 91.10% 754ms 0.64% PetscMallocA 3ms 0.0025% 91.10% 752ms 0.64% VecNorm_Seq 7ms 0.0059% 91.11% 739ms 0.62% PetscMallocAlign (partial-inline) 0 0% 91.11% 716ms 0.61% AbstractBidomainSolver::FinaliseLinearSystem 199ms 0.17% 91.27% 715ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 688ms 0.58% 91.86% 688ms 0.58% log_inline (inline) 2ms 0.0017% 91.86% 662ms 0.56% BidomainProblem::WriteOneStep 0 0% 91.86% 643ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)