File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 347ms, 88.52% of 392ms total Dropped 177 nodes (cum <= 1.96ms) flat flat% sum% cum cum% 0 0% 0% 382ms 97.45% __libc_start_call_main 0 0% 0% 382ms 97.45% __libc_start_main_impl 0 0% 0% 382ms 97.45% _start 0 0% 0% 379ms 96.68% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 379ms 96.68% CxxTest::TestRunner::runAllTests 0 0% 0% 379ms 96.68% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 379ms 96.68% main 0 0% 0% 345ms 88.01% CxxTest::RealTestDescription::run 0 0% 0% 345ms 88.01% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 345ms 88.01% CxxTest::TestRunner::runTest (inline) 0 0% 0% 345ms 88.01% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 345ms 88.01% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 340ms 86.73% AbstractCardiacProblem::Solve 0 0% 0% 340ms 86.73% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 305ms 77.81% LinearSystem::Solve 0 0% 0% 303ms 77.30% KSPSolve 0 0% 0% 303ms 77.30% KSPSolve_CG 0 0% 0% 303ms 77.30% KSPSolve_Private 0 0% 0% 181ms 46.17% KSP_PCApply.lto_priv.7 0 0% 0% 173ms 44.13% PCApply 0 0% 0% 173ms 44.13% PCApply_BJacobi_Singleblock 0 0% 0% 150ms 38.27% KSPSolve_PREONLY (partial-inline) 0 0% 0% 139ms 35.46% MatSolve 138ms 35.20% 35.20% 139ms 35.46% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 35.20% 139ms 35.46% PCApply_ICC 0 0% 35.20% 65ms 16.58% MatMult 0 0% 35.20% 65ms 16.58% MatMult_SeqAIJ 65ms 16.58% 51.79% 65ms 16.58% MatMult_SeqAIJ_Inode (inline) 34ms 8.67% 60.46% 34ms 8.67% ddot_ 1ms 0.26% 60.71% 31ms 7.91% AbstractCardiacTissue::SolveCellSystems 0 0% 60.71% 31ms 7.91% CxxTest::RealWorldDescription::setUp 0 0% 60.71% 31ms 7.91% PetscInitialize 0 0% 60.71% 31ms 7.91% PetscSetup::setUpWorld 0 0% 60.71% 31ms 7.91% PetscSetupUtils::CommonSetup 0 0% 60.71% 31ms 7.91% PetscSetupUtils::InitialisePetsc 0 0% 60.71% 30ms 7.65% PMPI_Init_thread 0 0% 60.71% 30ms 7.65% ompi_mpi_init 0 0% 60.71% 28ms 7.14% MatNullSpaceRemove 2ms 0.51% 61.22% 26ms 6.63% 0 0% 61.22% 22ms 5.61% AbstractCardiacCell::ComputeExceptVoltage 0 0% 61.22% 22ms 5.61% VecTDot 0 0% 61.22% 22ms 5.61% VecTDot_Seq 0 0% 61.22% 22ms 5.61% VecXDot_Seq_Private.constprop.0 0 0% 61.22% 21ms 5.36% orte_init 0 0% 61.22% 19ms 4.85% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 61.22% 19ms 4.85% VecMDot 2ms 0.51% 61.73% 19ms 4.85% VecMXDot_Private 17ms 4.34% 66.07% 17ms 4.34% VecMDot_Seq 4ms 1.02% 67.09% 16ms 4.08% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 67.09% 16ms 4.08% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.26% 67.35% 15ms 3.83% VecAYPX 14ms 3.57% 70.92% 14ms 3.57% VecAYPX_Seq 0 0% 70.92% 14ms 3.57% VecNorm 4ms 1.02% 71.94% 14ms 3.57% __GI___exp 0 0% 71.94% 14ms 3.57% hwloc_topology_load 0 0% 71.94% 13ms 3.32% KSP_PCApply (partial-inline) 0 0% 71.94% 13ms 3.32% hwloc_linux_get_tid_last_cpu_location 0 0% 71.94% 12ms 3.06% VecNorm_Seq 0 0% 71.94% 11ms 2.81% mca_base_framework_open 0 0% 71.94% 10ms 2.55% VecDuplicate 0 0% 71.94% 10ms 2.55% mca_base_framework_components_register 0 0% 71.94% 10ms 2.55% mca_base_framework_register 0 0% 71.94% 9ms 2.30% VecDuplicate_Seq 0 0% 71.94% 9ms 2.30% VecMAXPY 9ms 2.30% 74.23% 9ms 2.30% VecMAXPY_Seq 8ms 2.04% 76.28% 9ms 2.30% __ieee754_exp_fma 1ms 0.26% 76.53% 9ms 2.30% _dl_catch_error 0 0% 76.53% 9ms 2.30% _dl_init 0 0% 76.53% 9ms 2.30% _dlerror_run 0 0% 76.53% 9ms 2.30% call_init (inline) 0 0% 76.53% 8ms 2.04% __GI__dl_catch_exception 0 0% 76.53% 8ms 2.04% ___dlopen 0 0% 76.53% 8ms 2.04% dlopen_implementation (inline) 0 0% 76.53% 8ms 2.04% opal_stackframe_output 0 0% 76.53% 7ms 1.79% PetscMallocA 0 0% 76.53% 7ms 1.79% PetscMallocAlign 7ms 1.79% 78.32% 7ms 1.79% __GI___libc_read 0 0% 78.32% 7ms 1.79% _dl_open 0 0% 78.32% 7ms 1.79% _dl_start_user 0 0% 78.32% 7ms 1.79% dl_open_worker 0 0% 78.32% 7ms 1.79% dlopen_doit 0 0% 78.32% 7ms 1.79% mca_base_component_find 0 0% 78.32% 7ms 1.79% mca_base_component_repository_open 2ms 0.51% 78.83% 6ms 1.53% __GI___libc_malloc 1ms 0.26% 79.08% 6ms 1.53% __posix_memalign 0 0% 79.08% 5ms 1.28% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.51% 79.59% 5ms 1.28% CellLuoRudy1991FromCellML::GetIIonic 0 0% 79.59% 5ms 1.28% VecAXPY 0 0% 79.59% 5ms 1.28% VecAXPY_Seq 0 0% 79.59% 5ms 1.28% VecCreate 0 0% 79.59% 5ms 1.28% __GI___libc_free 5ms 1.28% 80.87% 5ms 1.28% _int_free 1ms 0.26% 81.12% 5ms 1.28% boost::serialization::singleton::get_instance 5ms 1.28% 82.40% 5ms 1.28% daxpy_ 0 0% 82.40% 5ms 1.28% dl_open_worker_begin 0 0% 82.40% 5ms 1.28% opal_hwloc_base_get_topology 0 0% 82.40% 5ms 1.28% orte_ess_base_proc_binding 0 0% 82.40% 4ms 1.02% AbstractCardiacProblem::Initialise 1ms 0.26% 82.65% 4ms 1.02% BidomainSolver::SetupLinearSystem 0 0% 82.65% 4ms 1.02% VecSetType 4ms 1.02% 83.67% 4ms 1.02% __strcmp_evex 0 0% 83.67% 4ms 1.02% _dl_map_object 0 0% 83.67% 4ms 1.02% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 83.67% 4ms 1.02% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 83.67% 4ms 1.02% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 83.67% 4ms 1.02% event_base_loop 0 0% 83.67% 4ms 1.02% mca_base_var_group_register 0 0% 83.67% 4ms 1.02% mca_base_var_register 2ms 0.51% 84.18% 3ms 0.77% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 84.18% 3ms 0.77% CxxTest::RealWorldDescription::tearDown 0 0% 84.18% 3ms 0.77% PetscFinalize 0 0% 84.18% 3ms 0.77% PetscSetup::tearDownWorld 0 0% 84.18% 3ms 0.77% PetscSetupUtils::CommonFinalize 0 0% 84.18% 3ms 0.77% VecDestroy 0 0% 84.18% 3ms 0.77% __GI_exit 0 0% 84.18% 3ms 0.77% __cxa_finalize 0 0% 84.18% 3ms 0.77% __run_exit_handlers 0 0% 84.18% 3ms 0.77% _dl_call_fini 0 0% 84.18% 3ms 0.77% _dl_fini 2ms 0.51% 84.69% 3ms 0.77% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 84.69% 3ms 0.77% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 84.69% 3ms 0.77% clone3 0 0% 84.69% 3ms 0.77% event_del_nolock_ 0 0% 84.69% 3ms 0.77% mca_base_component_var_register 0 0% 84.69% 3ms 0.77% mca_base_framework_components_open 0 0% 84.69% 3ms 0.77% ompi_mpi_finalize 0 0% 84.69% 3ms 0.77% opal_timer_base_get_freq 0 0% 84.69% 3ms 0.77% start_thread 0 0% 84.69% 2ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 84.69% 2ms 0.51% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 84.69% 2ms 0.51% KSPConvergedDefault 0 0% 84.69% 2ms 0.51% PetscFreeAlign 0 0% 84.69% 2ms 0.51% PetscFunctionListDestroy 0 0% 84.69% 2ms 0.51% PetscHMapFuncDestroy (inline) 0 0% 84.69% 2ms 0.51% PetscHeaderDestroy_Private 0 0% 84.69% 2ms 0.51% PetscMemcpy (inline) 0 0% 84.69% 2ms 0.51% VecCreate_Seq 0 0% 84.69% 2ms 0.51% VecCreate_Seq_Private 2ms 0.51% 85.20% 2ms 0.51% VecNormAvailable 0 0% 85.20% 2ms 0.51% XOpenDisplay 0 0% 85.20% 2ms 0.51% [hwloc_gl.so] 0 0% 85.20% 2ms 0.51% [hwloc_pci.so] 0 0% 85.20% 2ms 0.51% [libpciaccess.so.0.11.1] 0 0% 85.20% 2ms 0.51% [libxcb.so.1.1.0] 0 0% 85.20% 2ms 0.51% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 85.20% 2ms 0.51% _XConnectXCB 2ms 0.51% 85.71% 2ms 0.51% __GI___close 2ms 0.51% 86.22% 2ms 0.51% __GI___writev 2ms 0.51% 86.73% 2ms 0.51% __memcpy_avx512_unaligned_erms 0 0% 86.73% 2ms 0.51% _dl_lookup_symbol_x 1ms 0.26% 86.99% 2ms 0.51% _dl_map_object_from_fd 0 0% 86.99% 2ms 0.51% _dl_name_match_p 1ms 0.26% 87.24% 2ms 0.51% _int_malloc 0 0% 87.24% 2ms 0.51% gzgets 0 0% 87.24% 2ms 0.51% kh_destroy_HMapFunc (inline) 0 0% 87.24% 2ms 0.51% mca_base_framework_close 0 0% 87.24% 2ms 0.51% mca_base_var_cache_files 0 0% 87.24% 2ms 0.51% mca_topo_base_dist_graph_neighbors_count 0 0% 87.24% 2ms 0.51% pci_get_strings 2ms 0.51% 87.76% 2ms 0.51% std::_Rb_tree::_M_lower_bound (inline) 0 0% 87.76% 2ms 0.51% std::_Rb_tree::find (inline) 2ms 0.51% 88.27% 2ms 0.51% strcmp 0 0% 88.27% 2ms 0.51% udev_device_new_from_devnum 0 0% 88.27% 2ms 0.51% udev_device_new_from_subsystem_sysname 1ms 0.26% 88.52% 2ms 0.51% udev_enumerate_scan_devices 0 0% 88.52% 2ms 0.51% udev_set_log_priority 0 0% 88.52% 2ms 0.51% xcb_connect_to_display_with_auth_info