File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3106ms, 90.08% of 3448ms total Dropped 389 nodes (cum <= 17.24ms) flat flat% sum% cum cum% 0 0% 0% 3441ms 99.80% __libc_start_call_main 0 0% 0% 3441ms 99.80% __libc_start_main_impl 0 0% 0% 3441ms 99.80% _start 0 0% 0% 3439ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3439ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3439ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3439ms 99.74% main 0 0% 0% 3399ms 98.58% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3399ms 98.58% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3399ms 98.58% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 3395ms 98.46% AbstractCardiacProblem::Solve 0 0% 0% 3389ms 98.29% AbstractDynamicLinearPdeSolver::Solve 6ms 0.17% 0.17% 1615ms 46.84% AbstractCardiacTissue::SolveCellSystems 0 0% 0.17% 1397ms 40.52% LinearSystem::Solve 0 0% 0.17% 1379ms 39.99% KSPSolve 0 0% 0.17% 1379ms 39.99% KSPSolve_Private 0 0% 0.17% 1353ms 39.24% KSPSolve_SYMMLQ 8ms 0.23% 0.41% 898ms 26.04% AbstractCardiacCell::ComputeExceptVoltage 19ms 0.55% 0.96% 817ms 23.69% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.029% 0.99% 740ms 21.46% MatMult 8ms 0.23% 1.22% 735ms 21.32% MatMult_SeqAIJ (partial-inline) 726ms 21.06% 22.27% 735ms 21.32% MatMult_SeqAIJ_Inode (inline) 5ms 0.15% 22.42% 712ms 20.65% PCApply 0 0% 22.42% 704ms 20.42% PCApply_BJacobi_Singleblock 94ms 2.73% 25.15% 698ms 20.24% EulerIvpOdeSolver::CalculateNextYValue 18ms 0.52% 25.67% 604ms 17.52% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.029% 25.70% 604ms 17.52% KSPSolve_PREONLY (partial-inline) 197ms 5.71% 31.41% 598ms 17.34% CellLuoRudy1991FromCellML::EvaluateYDerivatives 251ms 7.28% 38.69% 570ms 16.53% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.029% 38.72% 570ms 16.53% MatSolve 0 0% 38.72% 570ms 16.53% PCApply_ICC 564ms 16.36% 55.08% 567ms 16.44% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 55.08% 508ms 14.73% KSP_PCApply.lto_priv.18 175ms 5.08% 60.15% 476ms 13.81% __GI___exp 33ms 0.96% 61.11% 358ms 10.38% BidomainSolver::SetupLinearSystem 264ms 7.66% 68.76% 266ms 7.71% __ieee754_exp_fma 0 0% 68.76% 261ms 7.57% KSPConvergedDefault 0 0% 68.76% 248ms 7.19% KSP_PCApply (partial-inline) 3ms 0.087% 68.85% 162ms 4.70% std::pow (inline) 9ms 0.26% 69.11% 156ms 4.52% __pow 5ms 0.15% 69.26% 145ms 4.21% __ieee754_pow_fma 109ms 3.16% 72.42% 109ms 3.16% [libchaste_heart.so] 2ms 0.058% 72.48% 88ms 2.55% MatNullSpaceRemove 52ms 1.51% 73.98% 78ms 2.26% CellLuoRudy1991FromCellML::VerifyStateVariables 66ms 1.91% 75.90% 69ms 2.00% exp_inline (inline) 69ms 2.00% 77.90% 69ms 2.00% log_inline (inline) 23ms 0.67% 78.57% 64ms 1.86% MPI_Wtime 0 0% 78.57% 58ms 1.68% VecDuplicate 0 0% 78.57% 54ms 1.57% VecMDot 7ms 0.2% 78.77% 54ms 1.57% VecMXDot_Private 4ms 0.12% 78.89% 47ms 1.36% PetscLogEventBeginDefault 41ms 1.19% 80.08% 41ms 1.19% [libm.so.6] 1ms 0.029% 80.10% 41ms 1.19% __GI___clock_gettime 40ms 1.16% 81.26% 40ms 1.16% [[vdso]] 39ms 1.13% 82.40% 39ms 1.13% ddot_ 10ms 0.29% 82.69% 38ms 1.10% PetscLogEventEndDefault 5ms 0.15% 82.83% 38ms 1.10% VecCopy 37ms 1.07% 83.90% 37ms 1.07% TimeStepper::CalculateNextTime 0 0% 83.90% 36ms 1.04% CxxTest::RealWorldDescription::setUp 0 0% 83.90% 36ms 1.04% PMPI_Init_thread 0 0% 83.90% 36ms 1.04% PetscInitialize 0 0% 83.90% 36ms 1.04% PetscSetup::setUpWorld 0 0% 83.90% 36ms 1.04% PetscSetupUtils::CommonSetup 0 0% 83.90% 36ms 1.04% PetscSetupUtils::InitialisePetsc 9ms 0.26% 84.16% 36ms 1.04% TimeStepper::TimeStepper 0 0% 84.16% 36ms 1.04% ompi_mpi_init 34ms 0.99% 85.15% 35ms 1.02% VecMDot_Seq 0 0% 85.15% 32ms 0.93% 0 0% 85.15% 32ms 0.93% VecDot 4ms 0.12% 85.27% 32ms 0.93% VecMAXPY 4ms 0.12% 85.38% 31ms 0.9% VecDuplicate_MPI 8ms 0.23% 85.61% 28ms 0.81% TimeStepper::AdvanceOneTimeStep 1ms 0.029% 85.64% 28ms 0.81% VecAXPY 0 0% 85.64% 28ms 0.81% VecCreate 4ms 0.12% 85.76% 28ms 0.81% VecDestroy 0 0% 85.76% 27ms 0.78% VecDuplicate_Seq 16ms 0.46% 86.22% 26ms 0.75% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 86.22% 26ms 0.75% VecDot_Seq 1ms 0.029% 86.25% 26ms 0.75% VecNorm 0 0% 86.25% 26ms 0.75% VecXDot_Seq_Private.constprop.0 2ms 0.058% 86.31% 25ms 0.73% PetscMallocA 24ms 0.7% 87.01% 24ms 0.7% [libchaste_ode.so] 24ms 0.7% 87.70% 24ms 0.7% __memcpy_avx512_unaligned_erms 0 0% 87.70% 24ms 0.7% orte_init 3ms 0.087% 87.79% 23ms 0.67% PetscMallocAlign 22ms 0.64% 88.43% 22ms 0.64% __ieee754_log_fma 0 0% 88.43% 20ms 0.58% PetscMemcpy (inline) 16ms 0.46% 88.89% 19ms 0.55% AbstractOneStepIvpOdeSolver::Solve 0 0% 88.89% 19ms 0.55% VecAXPY_Seq 5ms 0.15% 89.04% 18ms 0.52% AbstractCardiacCell::SetVoltage (partial-inline) 18ms 0.52% 89.56% 18ms 0.52% VecMAXPY_Seq 18ms 0.52% 90.08% 18ms 0.52% daxpy_