File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3761ms, 87.51% of 4298ms total Dropped 434 nodes (cum <= 21.49ms) flat flat% sum% cum cum% 0 0% 0% 4290ms 99.81% __libc_start_call_main 0 0% 0% 4290ms 99.81% __libc_start_main_impl 0 0% 0% 4290ms 99.81% _start 0 0% 0% 4287ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4287ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4287ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4287ms 99.74% main 0 0% 0% 4248ms 98.84% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4248ms 98.84% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4248ms 98.84% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4242ms 98.70% AbstractCardiacProblem::Solve 0 0% 0.023% 4230ms 98.42% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.28% 2334ms 54.30% AbstractCardiacTissue::SolveCellSystems 0 0% 0.28% 1599ms 37.20% LinearSystem::Solve 0 0% 0.28% 1559ms 36.27% KSPSolve 7ms 0.16% 0.44% 1559ms 36.27% KSPSolve_Private 5ms 0.12% 0.56% 1497ms 34.83% KSPSolve_SYMMLQ 39ms 0.91% 1.47% 1390ms 32.34% AbstractCardiacCell::ComputeExceptVoltage 28ms 0.65% 2.12% 1176ms 27.36% AbstractOneStepIvpOdeSolver::InternalSolve 67ms 1.56% 3.68% 999ms 23.24% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.093% 3.77% 972ms 22.62% PCApply 1ms 0.023% 3.79% 965ms 22.45% PCApply_BJacobi_Singleblock 253ms 5.89% 9.68% 914ms 21.27% CellLuoRudy1991FromCellML::EvaluateYDerivatives 365ms 8.49% 18.17% 822ms 19.13% __GI___exp 1ms 0.023% 18.19% 785ms 18.26% KSPSolve_PREONLY (partial-inline) 5ms 0.12% 18.31% 729ms 16.96% MatSolve 0 0% 18.31% 729ms 16.96% PCApply_ICC 717ms 16.68% 34.99% 721ms 16.78% MatSolve_SeqSBAIJ_1_NaturalOrdering 27ms 0.63% 35.62% 720ms 16.75% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.023% 35.64% 682ms 15.87% KSP_PCApply.lto_priv.18 227ms 5.28% 40.93% 661ms 15.38% CellLuoRudy1991FromCellML::GetIIonic 398ms 9.26% 50.19% 432ms 10.05% __ieee754_exp_fma 4ms 0.093% 50.28% 428ms 9.96% MatMult 6ms 0.14% 50.42% 419ms 9.75% MatMult_SeqAIJ 410ms 9.54% 59.96% 415ms 9.66% MatMult_SeqAIJ_Inode (inline) 0 0% 59.96% 369ms 8.59% KSPConvergedDefault 0 0% 59.96% 364ms 8.47% KSP_PCApply (partial-inline) 43ms 1.00% 60.96% 254ms 5.91% BidomainSolver::SetupLinearSystem 28ms 0.65% 61.61% 210ms 4.89% __pow 0 0% 61.61% 210ms 4.89% std::pow (inline) 26ms 0.6% 62.21% 182ms 4.23% __ieee754_pow_fma 66ms 1.54% 63.75% 155ms 3.61% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.75% 133ms 3.09% VecDuplicate 1ms 0.023% 63.77% 128ms 2.98% MatNullSpaceRemove 82ms 1.91% 65.68% 82ms 1.91% log_inline (inline) 0 0% 65.68% 81ms 1.88% VecMDot 9ms 0.21% 65.89% 81ms 1.88% VecMXDot_Private 38ms 0.88% 66.78% 67ms 1.56% TimeStepper::TimeStepper 1ms 0.023% 66.80% 67ms 1.56% VecDuplicate_MPI 4ms 0.093% 66.89% 66ms 1.54% VecDuplicate_Seq 64ms 1.49% 68.38% 65ms 1.51% exp_inline (inline) 3ms 0.07% 68.45% 59ms 1.37% VecCreate 20ms 0.47% 68.92% 57ms 1.33% MPI_Wtime 12ms 0.28% 69.19% 57ms 1.33% PetscLogEventBeginDefault 53ms 1.23% 70.43% 57ms 1.33% VecMDot_Seq 48ms 1.12% 71.54% 56ms 1.30% AbstractOneStepIvpOdeSolver::Solve 8ms 0.19% 71.73% 56ms 1.30% VecCopy 56ms 1.30% 73.03% 56ms 1.30% ddot_ 8ms 0.19% 73.22% 55ms 1.28% PetscMallocA 13ms 0.3% 73.52% 52ms 1.21% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.023% 73.55% 52ms 1.21% VecDestroy 15ms 0.35% 73.89% 50ms 1.16% PetscLogEventEndDefault 1ms 0.023% 73.92% 48ms 1.12% VecDot 20ms 0.47% 74.38% 47ms 1.09% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 4ms 0.093% 74.48% 47ms 1.09% PetscMallocAlign (partial-inline) 3ms 0.07% 74.55% 46ms 1.07% VecMAXPY 44ms 1.02% 75.57% 44ms 1.02% TimeStepper::CalculateNextTime 42ms 0.98% 76.55% 42ms 0.98% std::isinf (inline) 13ms 0.3% 76.85% 40ms 0.93% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.85% 40ms 0.93% AbstractBidomainSolver::FinaliseLinearSystem 40ms 0.93% 77.78% 40ms 0.93% __ieee754_log_fma 25ms 0.58% 78.36% 40ms 0.93% top12 (inline) 0 0% 78.36% 39ms 0.91% VecDot_Seq 1ms 0.023% 78.39% 39ms 0.91% VecNorm 0 0% 78.39% 39ms 0.91% VecXDot_Seq_Private.constprop.0 3ms 0.07% 78.46% 38ms 0.88% VecAXPY 38ms 0.88% 79.34% 38ms 0.88% [libchaste_heart.so] 38ms 0.88% 80.22% 38ms 0.88% __memcpy_avx_unaligned_erms 33ms 0.77% 80.99% 36ms 0.84% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 36ms 0.84% 81.83% 36ms 0.84% [[vdso]] 0 0% 81.83% 36ms 0.84% __GI___clock_gettime 0 0% 81.83% 35ms 0.81% CxxTest::RealWorldDescription::setUp 0 0% 81.83% 35ms 0.81% PetscSetup::setUpWorld 0 0% 81.83% 35ms 0.81% PetscSetupUtils::CommonSetup 0 0% 81.83% 34ms 0.79% PMPI_Init_thread 0 0% 81.83% 34ms 0.79% PetscInitialize 0 0% 81.83% 34ms 0.79% PetscMemcpy (inline) 0 0% 81.83% 34ms 0.79% PetscSetupUtils::InitialisePetsc 1ms 0.023% 81.85% 34ms 0.79% VecCreate_MPI_Private 0 0% 81.85% 34ms 0.79% ompi_mpi_init 3ms 0.07% 81.92% 33ms 0.77% VecSetType 32ms 0.74% 82.67% 32ms 0.74% AbstractParameterisedSystem::SetAnyVariable 12ms 0.28% 82.95% 32ms 0.74% std::__cxx11::basic_string::basic_string 0 0% 82.95% 31ms 0.72% PetscMemzero (inline) 0 0% 82.95% 31ms 0.72% VecNorm_Seq 31ms 0.72% 83.67% 31ms 0.72% __memset_avx2_unaligned_erms 8ms 0.19% 83.85% 30ms 0.7% TimeStepper::AdvanceOneTimeStep 1ms 0.023% 83.88% 30ms 0.7% VecCopy_Seq (partial-inline) 25ms 0.58% 84.46% 29ms 0.67% AbstractParameterisedSystem::GetAnyVariable 29ms 0.67% 85.13% 29ms 0.67% DistributedVector::Iterator::operator!= 2ms 0.047% 85.18% 28ms 0.65% PetscHeaderCreate_Private 2ms 0.047% 85.23% 27ms 0.63% 6ms 0.14% 85.37% 27ms 0.63% PetscHeaderDestroy_Private 0 0% 85.37% 27ms 0.63% VecCreate_Seq 0 0% 85.37% 26ms 0.6% PetscTimeSubtract (inline) 25ms 0.58% 85.95% 25ms 0.58% [libm.so.6] 12ms 0.28% 86.23% 24ms 0.56% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 86.23% 24ms 0.56% VecNorm_MPI 1ms 0.023% 86.25% 24ms 0.56% VecNorm_MPI_Default.constprop.0 3ms 0.07% 86.32% 24ms 0.56% __GI___libc_malloc 5ms 0.12% 86.44% 23ms 0.54% PMPI_Comm_get_attr 23ms 0.54% 86.97% 23ms 0.54% VecMAXPY_Seq 22ms 0.51% 87.48% 22ms 0.51% RegularStimulus::GetStimulus 1ms 0.023% 87.51% 22ms 0.51% VecAXPY_Seq 0 0% 87.51% 22ms 0.51% orte_init