File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110671ms, 92.06% of 120215ms total Dropped 1133 nodes (cum <= 601.08ms) flat flat% sum% cum cum% 0 0% 0% 120200ms 100% __libc_start_call_main 0 0% 0% 120200ms 100% __libc_start_main_impl 0 0% 0% 120200ms 100% _start 0 0% 0% 120198ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120198ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120198ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120198ms 100% main 0 0% 0% 120155ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120155ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120155ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120155ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120155ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 120154ms 99.95% AbstractConvergenceTester::Converge 3ms 0.0025% 0.0025% 118882ms 98.89% AbstractCardiacProblem::Solve 7ms 0.0058% 0.0083% 118105ms 98.24% AbstractDynamicLinearPdeSolver::Solve 9ms 0.0075% 0.016% 66375ms 55.21% LinearSystem::Solve 3ms 0.0025% 0.018% 65842ms 54.77% KSPSolve 13ms 0.011% 0.029% 65839ms 54.77% KSPSolve_Private 13ms 0.011% 0.04% 65383ms 54.39% KSPSolve_SYMMLQ 208ms 0.17% 0.21% 42936ms 35.72% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.22% 36888ms 30.69% PCApply 6ms 0.005% 0.22% 36872ms 30.67% PCApply_BJacobi_Singleblock 0 0% 0.22% 34184ms 28.44% KSPSolve_PREONLY (partial-inline) 1686ms 1.40% 1.62% 33100ms 27.53% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0033% 1.63% 33019ms 27.47% PCApply_ICC 9ms 0.0075% 1.63% 33015ms 27.46% MatSolve 32539ms 27.07% 28.70% 33006ms 27.46% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 3ms 0.0025% 28.70% 31892ms 26.53% KSP_PCApply.lto_priv.18 6716ms 5.59% 34.29% 27978ms 23.27% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 13ms 0.011% 34.30% 22326ms 18.57% MatMult 557ms 0.46% 34.76% 22313ms 18.56% MatMult_SeqAIJ (partial-inline) 21745ms 18.09% 52.85% 21988ms 18.29% MatMult_SeqAIJ_Inode (inline) 2034ms 1.69% 54.54% 14892ms 12.39% CardiacNewtonSolver::Solve 304ms 0.25% 54.80% 9006ms 7.49% AbstractCardiacTissue::UpdateCaches (inline) 4505ms 3.75% 58.55% 8695ms 7.23% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1908ms 1.59% 60.13% 8491ms 7.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1075ms 0.89% 61.03% 7819ms 6.50% BidomainSolver::SetupLinearSystem 936ms 0.78% 61.81% 7099ms 5.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 61.81% 7032ms 5.85% KSP_PCApply (partial-inline) 4ms 0.0033% 61.81% 6422ms 5.34% KSPConvergedDefault 5902ms 4.91% 66.72% 5902ms 4.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3944ms 3.28% 70.00% 3983ms 3.31% __ieee754_log_fma 0 0% 70.00% 3745ms 3.12% boost::numeric::ublas::norm_inf (inline) 2561ms 2.13% 72.13% 3745ms 3.12% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.13% 3745ms 3.12% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.13% 3745ms 3.12% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3463ms 2.88% 75.01% 3463ms 2.88% __memcpy_avx_unaligned_erms 7ms 0.0058% 75.02% 3424ms 2.85% MatNullSpaceRemove 0 0% 75.02% 3418ms 2.84% PetscMemcpy (inline) 41ms 0.034% 75.05% 3296ms 2.74% std::pow (inline) 2071ms 1.72% 76.77% 3264ms 2.72% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 384ms 0.32% 77.09% 3251ms 2.70% __pow 24ms 0.02% 77.11% 2995ms 2.49% VecCopy 3ms 0.0025% 77.12% 2969ms 2.47% VecCopy_Seq (partial-inline) 382ms 0.32% 77.43% 2860ms 2.38% __ieee754_pow_fma 2740ms 2.28% 79.71% 2740ms 2.28% ddot_ 19ms 0.016% 79.73% 2595ms 2.16% VecAXPY 2ms 0.0017% 79.73% 2576ms 2.14% VecAXPY_Seq 2555ms 2.13% 81.86% 2555ms 2.13% daxpy_ 4ms 0.0033% 81.86% 2232ms 1.86% VecDot 0 0% 81.86% 2228ms 1.85% VecDot_Seq 0 0% 81.86% 2228ms 1.85% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.86% 2067ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.86% 1965ms 1.63% VecMDot 15ms 0.012% 81.88% 1963ms 1.63% VecMXDot_Private 1942ms 1.62% 83.49% 1945ms 1.62% VecMDot_Seq 30ms 0.025% 83.52% 1709ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1616ms 1.34% 84.86% 1667ms 1.39% exp_inline (inline) 5ms 0.0042% 84.87% 1452ms 1.21% VecMAXPY 1441ms 1.20% 86.06% 1447ms 1.20% VecMAXPY_Seq 0 0% 86.06% 1420ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1277ms 1.06% 87.13% 1277ms 1.06% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1215ms 1.01% 88.14% 1215ms 1.01% __memset_avx2_unaligned_erms 0 0% 88.14% 1206ms 1.00% PetscMemzero (inline) 0 0% 88.14% 1118ms 0.93% CuboidMeshConstructor::Construct 0 0% 88.14% 1117ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.14% 1117ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 0 0% 88.14% 1098ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.14% 1098ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.14% 1098ms 0.91% boost_numeric_ublas_abs (inline) 1098ms 0.91% 89.05% 1098ms 0.91% std::abs (inline) 2ms 0.0017% 89.05% 1088ms 0.91% KSP_RemoveNullSpace (inline) 4ms 0.0033% 89.06% 1087ms 0.9% boost::numeric::ublas::matrix_assign (inline) 195ms 0.16% 89.22% 1078ms 0.9% boost::numeric::ublas::indexing_matrix_assign 3ms 0.0025% 89.22% 1028ms 0.86% Element::Element 4ms 0.0033% 89.22% 1007ms 0.84% VecDuplicate 5ms 0.0042% 89.23% 996ms 0.83% AbstractTetrahedralElement::CalculateJacobian 708ms 0.59% 89.82% 955ms 0.79% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.82% 952ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.005% 89.82% 872ms 0.73% BidomainAssembler::ComputeMatrixTerm 6ms 0.005% 89.83% 860ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 16ms 0.013% 89.84% 853ms 0.71% PetscMallocA 10ms 0.0083% 89.85% 850ms 0.71% VecScale 841ms 0.7% 90.55% 841ms 0.7% [libchaste_heart.so] 4ms 0.0033% 90.55% 840ms 0.7% VecScale_Seq 9ms 0.0075% 90.56% 837ms 0.7% PetscMallocAlign (partial-inline) 836ms 0.7% 91.25% 836ms 0.7% dscal_ 4ms 0.0033% 91.26% 782ms 0.65% VecNorm 2ms 0.0017% 91.26% 771ms 0.64% VecNorm_Seq 765ms 0.64% 91.90% 765ms 0.64% log_inline (inline) 1ms 0.00083% 91.90% 722ms 0.6% BidomainProblem::WriteOneStep 2ms 0.0017% 91.90% 664ms 0.55% AbstractBidomainSolver::FinaliseLinearSystem 192ms 0.16% 92.06% 660ms 0.55% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 92.06% 647ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 4ms 0.0033% 92.06% 611ms 0.51% VecDuplicate_Seq