File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2871ms, 89.50% of 3208ms total Dropped 395 nodes (cum <= 16.04ms) flat flat% sum% cum cum% 0 0% 0% 3201ms 99.78% __libc_start_call_main 0 0% 0% 3201ms 99.78% __libc_start_main_impl 0 0% 0% 3201ms 99.78% _start 0 0% 0% 3198ms 99.69% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3198ms 99.69% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3198ms 99.69% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3198ms 99.69% main 0 0% 0% 3161ms 98.53% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3161ms 98.53% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3161ms 98.53% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.031% 0.031% 3157ms 98.41% AbstractCardiacProblem::Solve 0 0% 0.031% 3146ms 98.07% AbstractDynamicLinearPdeSolver::Solve 6ms 0.19% 0.22% 1493ms 46.54% AbstractCardiacTissue::SolveCellSystems 0 0% 0.22% 1297ms 40.43% LinearSystem::Solve 0 0% 0.22% 1270ms 39.59% KSPSolve 2ms 0.062% 0.28% 1270ms 39.59% KSPSolve_Private 2ms 0.062% 0.34% 1245ms 38.81% KSPSolve_SYMMLQ 15ms 0.47% 0.81% 845ms 26.34% AbstractCardiacCell::ComputeExceptVoltage 12ms 0.37% 1.18% 747ms 23.29% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.031% 1.22% 698ms 21.76% MatMult 247ms 7.70% 8.92% 693ms 21.60% MatMult_SeqAIJ (partial-inline) 69ms 2.15% 11.07% 662ms 20.64% EulerIvpOdeSolver::CalculateNextYValue 0 0% 11.07% 661ms 20.60% PCApply 0 0% 11.07% 655ms 20.42% PCApply_BJacobi_Singleblock 236ms 7.36% 18.42% 592ms 18.45% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 18.42% 566ms 17.64% KSPSolve_PREONLY (partial-inline) 7ms 0.22% 18.64% 542ms 16.90% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.031% 18.67% 529ms 16.49% MatSolve 0 0% 18.67% 529ms 16.49% PCApply_ICC 235ms 7.33% 26.00% 525ms 16.37% CellLuoRudy1991FromCellML::GetIIonic 520ms 16.21% 42.21% 522ms 16.27% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 42.21% 478ms 14.90% KSP_PCApply.lto_priv.18 445ms 13.87% 56.08% 452ms 14.09% MatMult_SeqAIJ_Inode (inline) 145ms 4.52% 60.60% 424ms 13.22% __GI___exp 27ms 0.84% 61.44% 335ms 10.44% BidomainSolver::SetupLinearSystem 251ms 7.82% 69.26% 252ms 7.86% __ieee754_exp_fma 0 0% 69.26% 235ms 7.33% KSP_PCApply (partial-inline) 1ms 0.031% 69.30% 234ms 7.29% KSPConvergedDefault 4ms 0.12% 69.42% 155ms 4.83% std::pow (inline) 7ms 0.22% 69.64% 148ms 4.61% __pow 10ms 0.31% 69.95% 141ms 4.40% __ieee754_pow_fma 0 0% 69.95% 97ms 3.02% MatNullSpaceRemove 85ms 2.65% 72.60% 85ms 2.65% [libchaste_heart.so] 42ms 1.31% 73.91% 75ms 2.34% CellLuoRudy1991FromCellML::VerifyStateVariables 74ms 2.31% 76.22% 74ms 2.31% log_inline (inline) 14ms 0.44% 76.65% 59ms 1.84% MPI_Wtime 0 0% 76.65% 58ms 1.81% VecDuplicate 52ms 1.62% 78.27% 57ms 1.78% exp_inline (inline) 0 0% 78.27% 53ms 1.65% VecMDot 5ms 0.16% 78.43% 53ms 1.65% VecMXDot_Private 0 0% 78.43% 44ms 1.37% VecMAXPY 43ms 1.34% 79.77% 43ms 1.34% [[vdso]] 0 0% 79.77% 43ms 1.34% __GI___clock_gettime 3ms 0.094% 79.86% 40ms 1.25% PetscLogEventEndDefault 35ms 1.09% 80.95% 37ms 1.15% VecMDot_Seq 37ms 1.15% 82.11% 37ms 1.15% ddot_ 0 0% 82.11% 33ms 1.03% CxxTest::RealWorldDescription::setUp 0 0% 82.11% 33ms 1.03% PetscInitialize 0 0% 82.11% 33ms 1.03% PetscSetup::setUpWorld 0 0% 82.11% 33ms 1.03% PetscSetupUtils::CommonSetup 0 0% 82.11% 33ms 1.03% PetscSetupUtils::InitialisePetsc 33ms 1.03% 83.14% 33ms 1.03% VecMAXPY_Seq 0 0% 83.14% 32ms 1% 0 0% 83.14% 32ms 1% PMPI_Init_thread 0 0% 83.14% 32ms 1% VecDot 1ms 0.031% 83.17% 32ms 1% VecDuplicate_MPI 0 0% 83.17% 32ms 1% ompi_mpi_init 29ms 0.9% 84.07% 29ms 0.9% [libm.so.6] 9ms 0.28% 84.35% 27ms 0.84% TimeStepper::AdvanceOneTimeStep 0 0% 84.35% 27ms 0.84% VecDot_Seq 0 0% 84.35% 27ms 0.84% VecXDot_Seq_Private.constprop.0 2ms 0.062% 84.41% 26ms 0.81% VecCopy 1ms 0.031% 84.45% 26ms 0.81% VecDestroy 0 0% 84.45% 26ms 0.81% VecDuplicate_Seq 7ms 0.22% 84.66% 25ms 0.78% PetscLogEventBeginDefault 25ms 0.78% 85.44% 25ms 0.78% TimeStepper::CalculateNextTime 0 0% 85.44% 25ms 0.78% VecNorm 15ms 0.47% 85.91% 24ms 0.75% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 5ms 0.16% 86.07% 24ms 0.75% PetscMallocA 2ms 0.062% 86.13% 24ms 0.75% VecAXPY 9ms 0.28% 86.41% 23ms 0.72% TimeStepper::TimeStepper 16ms 0.5% 86.91% 22ms 0.69% AbstractOneStepIvpOdeSolver::Solve 22ms 0.69% 87.59% 22ms 0.69% [libchaste_ode.so] 0 0% 87.59% 22ms 0.69% orte_init 0 0% 87.59% 21ms 0.65% VecNorm_Seq 5ms 0.16% 87.75% 20ms 0.62% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 4ms 0.12% 87.87% 19ms 0.59% AbstractCardiacCell::SetVoltage (partial-inline) 2ms 0.062% 87.94% 19ms 0.59% PetscMallocAlign 0 0% 87.94% 19ms 0.59% VecCreate 0 0% 87.94% 19ms 0.59% VecCreate_MPI_Private 6ms 0.19% 88.12% 18ms 0.56% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 88.12% 18ms 0.56% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.031% 88.15% 18ms 0.56% VecSetType 18ms 0.56% 88.72% 18ms 0.56% __ieee754_log_fma 14ms 0.44% 89.15% 17ms 0.53% AbstractParameterisedSystem::GetAnyVariable 1ms 0.031% 89.18% 17ms 0.53% VecAXPY_Seq 10ms 0.31% 89.50% 17ms 0.53% std::__cxx11::basic_string::basic_string