File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110213ms, 91.89% of 119937ms total Dropped 1167 nodes (cum <= 599.68ms) flat flat% sum% cum cum% 0 0% 0% 119918ms 100% __libc_start_call_main 0 0% 0% 119918ms 100% __libc_start_main_impl 0 0% 0% 119918ms 100% _start 0 0% 0% 119916ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119916ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119916ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119916ms 100% main 0 0% 0% 119880ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119880ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119880ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119880ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119880ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119880ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 118661ms 98.94% AbstractCardiacProblem::Solve 14ms 0.012% 0.013% 117882ms 98.29% AbstractDynamicLinearPdeSolver::Solve 9ms 0.0075% 0.021% 66355ms 55.32% LinearSystem::Solve 2ms 0.0017% 0.023% 65846ms 54.90% KSPSolve 14ms 0.012% 0.034% 65844ms 54.90% KSPSolve_Private 8ms 0.0067% 0.041% 65418ms 54.54% KSPSolve_SYMMLQ 200ms 0.17% 0.21% 42698ms 35.60% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.21% 37078ms 30.91% PCApply 2ms 0.0017% 0.21% 37070ms 30.91% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.21% 34429ms 28.71% KSPSolve_PREONLY (partial-inline) 1ms 0.00083% 0.21% 33383ms 27.83% PCApply_ICC 1ms 0.00083% 0.22% 33382ms 27.83% MatSolve 32861ms 27.40% 27.61% 33381ms 27.83% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1390ms 1.16% 28.77% 32834ms 27.38% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 28.77% 31953ms 26.64% KSP_PCApply.lto_priv.18 6828ms 5.69% 34.47% 28425ms 23.70% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.0025% 34.47% 22504ms 18.76% MatMult 240ms 0.2% 34.67% 22501ms 18.76% MatMult_SeqAIJ (partial-inline) 21978ms 18.32% 52.99% 22496ms 18.76% MatMult_SeqAIJ_Inode (inline) 1999ms 1.67% 54.66% 14870ms 12.40% CardiacNewtonSolver::Solve 342ms 0.29% 54.95% 9052ms 7.55% AbstractCardiacTissue::UpdateCaches (inline) 4433ms 3.70% 58.64% 8639ms 7.20% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1979ms 1.65% 60.29% 8519ms 7.10% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1033ms 0.86% 61.15% 7755ms 6.47% BidomainSolver::SetupLinearSystem 1112ms 0.93% 62.08% 7250ms 6.04% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 62.08% 7048ms 5.88% KSP_PCApply (partial-inline) 4ms 0.0033% 62.08% 6527ms 5.44% KSPConvergedDefault 5869ms 4.89% 66.98% 5869ms 4.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3878ms 3.23% 70.21% 3931ms 3.28% __ieee754_log_fma 0 0% 70.21% 3826ms 3.19% boost::numeric::ublas::norm_inf (inline) 2634ms 2.20% 72.41% 3826ms 3.19% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.41% 3826ms 3.19% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.41% 3826ms 3.19% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 8ms 0.0067% 72.41% 3280ms 2.73% MatNullSpaceRemove 3229ms 2.69% 75.11% 3229ms 2.69% __memcpy_avx_unaligned_erms 0 0% 75.11% 3195ms 2.66% PetscMemcpy (inline) 37ms 0.031% 75.14% 3191ms 2.66% std::pow (inline) 385ms 0.32% 75.46% 3152ms 2.63% __pow 1761ms 1.47% 76.93% 2882ms 2.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 386ms 0.32% 77.25% 2754ms 2.30% __ieee754_pow_fma 2737ms 2.28% 79.53% 2737ms 2.28% ddot_ 16ms 0.013% 79.54% 2709ms 2.26% VecCopy 3ms 0.0025% 79.55% 2688ms 2.24% VecCopy_Seq (partial-inline) 17ms 0.014% 79.56% 2525ms 2.11% VecAXPY 2ms 0.0017% 79.56% 2508ms 2.09% VecAXPY_Seq 2492ms 2.08% 81.64% 2492ms 2.08% daxpy_ 5ms 0.0042% 81.64% 2234ms 1.86% VecDot 0 0% 81.64% 2229ms 1.86% VecDot_Seq 1ms 0.00083% 81.64% 2229ms 1.86% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.65% 2077ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.65% 1833ms 1.53% VecMDot 12ms 0.01% 81.66% 1833ms 1.53% VecMXDot_Private 1813ms 1.51% 83.17% 1817ms 1.51% VecMDot_Seq 36ms 0.03% 83.20% 1728ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1579ms 1.32% 84.52% 1640ms 1.37% exp_inline (inline) 1478ms 1.23% 85.75% 1478ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 5ms 0.0042% 85.75% 1439ms 1.20% VecMAXPY 1422ms 1.19% 86.94% 1434ms 1.20% VecMAXPY_Seq 0 0% 86.94% 1429ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1173ms 0.98% 87.92% 1173ms 0.98% __memset_avx2_unaligned_erms 0 0% 87.92% 1167ms 0.97% PetscMemzero (inline) 12ms 0.01% 87.93% 1123ms 0.94% boost::numeric::ublas::matrix_assign (inline) 225ms 0.19% 88.11% 1109ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.11% 1089ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.11% 1089ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.11% 1089ms 0.91% boost_numeric_ublas_abs (inline) 1089ms 0.91% 89.02% 1089ms 0.91% std::abs (inline) 0 0% 89.02% 1070ms 0.89% CuboidMeshConstructor::Construct 0 0% 89.02% 1069ms 0.89% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00083% 89.02% 1069ms 0.89% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0017% 89.02% 1065ms 0.89% KSP_RemoveNullSpace (inline) 825ms 0.69% 89.71% 1063ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00083% 89.71% 980ms 0.82% VecDuplicate 4ms 0.0033% 89.72% 979ms 0.82% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 89.72% 974ms 0.81% Element::Element 0 0% 89.72% 925ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.005% 89.72% 885ms 0.74% BidomainAssembler::ComputeMatrixTerm 854ms 0.71% 90.43% 854ms 0.71% [libchaste_heart.so] 5ms 0.0042% 90.44% 849ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 11ms 0.0092% 90.45% 843ms 0.7% VecScale 2ms 0.0017% 90.45% 832ms 0.69% VecScale_Seq 827ms 0.69% 91.14% 827ms 0.69% dscal_ 13ms 0.011% 91.15% 813ms 0.68% PetscMallocA 7ms 0.0058% 91.15% 800ms 0.67% PetscMallocAlign (partial-inline) 2ms 0.0017% 91.16% 764ms 0.64% VecNorm 1ms 0.00083% 91.16% 750ms 0.63% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 91.16% 750ms 0.63% VecNorm_Seq 198ms 0.17% 91.32% 748ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00083% 91.32% 723ms 0.6% BidomainProblem::WriteOneStep 683ms 0.57% 91.89% 683ms 0.57% log_inline (inline) 0 0% 91.89% 648ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)