File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12948ms, 87.28% of 14835ms total Dropped 739 nodes (cum <= 74.17ms) flat flat% sum% cum cum% 0 0% 0% 14829ms 100% __libc_start_call_main 0 0% 0% 14829ms 100% __libc_start_main_impl 0 0% 0% 14829ms 100% _start 0 0% 0% 14826ms 99.94% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14826ms 99.94% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14826ms 99.94% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14826ms 99.94% main 0 0% 0% 14787ms 99.68% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14787ms 99.68% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14787ms 99.68% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0067% 0.0067% 14765ms 99.53% AbstractCardiacProblem::Solve 4ms 0.027% 0.034% 11461ms 77.26% AbstractDynamicLinearPdeSolver::Solve 46ms 0.31% 0.34% 9176ms 61.85% AbstractCardiacTissue::SolveCellSystems 87ms 0.59% 0.93% 5863ms 39.52% AbstractCardiacCell::ComputeExceptVoltage 183ms 1.23% 2.16% 5172ms 34.86% AbstractOneStepIvpOdeSolver::InternalSolve 351ms 2.37% 4.53% 4350ms 29.32% EulerIvpOdeSolver::CalculateNextYValue 948ms 6.39% 10.92% 3951ms 26.63% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1688ms 11.38% 22.30% 3552ms 23.94% __GI___exp 1ms 0.0067% 22.31% 3239ms 21.83% MonodomainProblem::WriteOneStep 2ms 0.013% 22.32% 3089ms 20.82% Hdf5DataWriter::PutVector 1ms 0.0067% 22.33% 3086ms 20.80% H5Dwrite 4ms 0.027% 22.35% 3054ms 20.59% H5D__write 95ms 0.64% 22.99% 2595ms 17.49% AbstractCardiacTissue::UpdateCaches (inline) 823ms 5.55% 28.54% 2461ms 16.59% CellLuoRudy1991FromCellML::GetIIonic 1651ms 11.13% 39.67% 1791ms 12.07% __ieee754_exp_fma 0 0% 39.67% 1789ms 12.06% H5D__chunk_collective_write 16ms 0.11% 39.78% 1789ms 12.06% H5F_set_coll_metadata_reads 8ms 0.054% 39.83% 1591ms 10.72% H5FD_s3comms_uriencode 0 0% 39.83% 1485ms 10.01% LinearSystem::Solve 0 0% 39.83% 1345ms 9.07% KSPSolve 3ms 0.02% 39.85% 1345ms 9.07% KSPSolve_Private 6ms 0.04% 39.89% 1335ms 9.00% KSPSolve_CG 2ms 0.013% 39.91% 1218ms 8.21% H5F_block_write 2ms 0.013% 39.92% 1216ms 8.20% H5PB_write 2ms 0.013% 39.93% 1214ms 8.18% H5F__accum_write 37ms 0.25% 40.18% 1212ms 8.17% 2ms 0.013% 40.20% 1212ms 8.17% H5FD_write 7ms 0.047% 40.24% 1156ms 7.79% H5D__chunk_cacheable 1ms 0.0067% 40.25% 1128ms 7.60% H5D__mpio_select_write 2ms 0.013% 40.26% 1053ms 7.10% PMPI_File_write_at_all 1023ms 6.90% 47.16% 1027ms 6.92% __GI_pwritev64 194ms 1.31% 48.47% 1015ms 6.84% H5S_select_iterate 6ms 0.04% 48.51% 863ms 5.82% std::pow (inline) 87ms 0.59% 49.09% 857ms 5.78% __pow 83ms 0.56% 49.65% 837ms 5.64% H5D__chunk_set_sizes 323ms 2.18% 51.83% 781ms 5.26% MonodomainSolver::SetupLinearSystem 98ms 0.66% 52.49% 770ms 5.19% __ieee754_pow_fma 0 0% 52.49% 721ms 4.86% PCApply 0 0% 52.49% 718ms 4.84% PCApply_BJacobi_Singleblock 0 0% 52.49% 688ms 4.64% KSPSolve_PREONLY 0 0% 52.49% 683ms 4.60% MatSolve 674ms 4.54% 57.03% 683ms 4.60% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 57.03% 683ms 4.60% PCApply_ICC 4ms 0.027% 57.06% 643ms 4.33% MatMult 636ms 4.29% 61.35% 639ms 4.31% MatMult_SeqAIJ 3ms 0.02% 61.37% 548ms 3.69% KSP_PCApply.lto_priv.7 259ms 1.75% 63.11% 544ms 3.67% CellLuoRudy1991FromCellML::VerifyStateVariables 45ms 0.3% 63.42% 458ms 3.09% H5S_mpio_space_type 371ms 2.50% 65.92% 371ms 2.50% log_inline (inline) 24ms 0.16% 66.08% 265ms 1.79% H5S_select_iter_next 261ms 1.76% 67.84% 262ms 1.77% exp_inline (inline) 247ms 1.66% 69.50% 247ms 1.66% H5PL_load 132ms 0.89% 70.39% 247ms 1.66% TimeStepper::TimeStepper 2ms 0.013% 70.41% 229ms 1.54% KSPConvergedDefault 66ms 0.44% 70.85% 204ms 1.38% __GI___libc_malloc 19ms 0.13% 70.98% 195ms 1.31% H5VM_chunk_index 192ms 1.29% 72.28% 192ms 1.29% __memcpy_avx_unaligned_erms 86ms 0.58% 72.85% 179ms 1.21% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 144ms 0.97% 73.83% 177ms 1.19% _int_malloc 0 0% 73.83% 176ms 1.19% KSP_PCApply 100ms 0.67% 74.50% 176ms 1.19% top12 (inline) 135ms 0.91% 75.41% 161ms 1.09% AbstractOneStepIvpOdeSolver::Solve 10ms 0.067% 75.48% 157ms 1.06% MPI_Type_free 156ms 1.05% 76.53% 156ms 1.05% [libchaste_heart.so] 29ms 0.2% 76.72% 156ms 1.05% __GI___libc_free 8ms 0.054% 76.78% 156ms 1.05% ompi_datatype_create 8ms 0.054% 76.83% 156ms 1.05% ompi_datatype_destroy 6ms 0.04% 76.87% 155ms 1.04% std::vector::_M_assign_aux (inline) 0 0% 76.87% 155ms 1.04% std::vector::assign (inline) 4ms 0.027% 76.90% 149ms 1.00% Hdf5DataWriter::PutUnlimitedVariable 120ms 0.81% 77.71% 143ms 0.96% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 23ms 0.16% 77.86% 138ms 0.93% H5S_set_version 137ms 0.92% 78.79% 137ms 0.92% ddot_ 2ms 0.013% 78.80% 136ms 0.92% std::__copy_move::__copy_m (inline) 0 0% 78.80% 136ms 0.92% std::__copy_move_a (inline) 0 0% 78.80% 136ms 0.92% std::__copy_move_a1 (inline) 0 0% 78.80% 136ms 0.92% std::__copy_move_a2 (inline) 0 0% 78.80% 136ms 0.92% std::copy (inline) 10ms 0.067% 78.87% 134ms 0.9% ompi_info_register_framework_params 35ms 0.24% 79.10% 132ms 0.89% ompi_datatype_release_args 131ms 0.88% 79.99% 131ms 0.88% std::isinf (inline) 32ms 0.22% 80.20% 129ms 0.87% AbstractCardiacCell::SetVoltage (partial-inline) 58ms 0.39% 80.59% 127ms 0.86% _int_free 124ms 0.84% 81.43% 124ms 0.84% TimeStepper::CalculateNextTime 121ms 0.82% 82.24% 121ms 0.82% __ieee754_log_fma 44ms 0.3% 82.54% 115ms 0.78% H5VM_array_calc 62ms 0.42% 82.96% 107ms 0.72% H5S_hyper_add_span_element 75ms 0.51% 83.46% 103ms 0.69% AbstractParameterisedSystem::GetAnyVariable 6ms 0.04% 83.51% 98ms 0.66% PMPI_Type_create_resized 2ms 0.013% 83.52% 96ms 0.65% VecDuplicate 4ms 0.027% 83.55% 96ms 0.65% VecNorm 2ms 0.013% 83.56% 94ms 0.63% VecDuplicate_MPI 1ms 0.0067% 83.57% 93ms 0.63% VecTDot 92ms 0.62% 84.19% 92ms 0.62% H5VM_chunk_index_scaled 0 0% 84.19% 92ms 0.62% VecTDot_Seq 0 0% 84.19% 92ms 0.62% VecXDot_Seq_Private.constprop.0 43ms 0.29% 84.48% 88ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 74ms 0.5% 84.97% 88ms 0.59% AbstractParameterisedSystem::SetAnyVariable 2ms 0.013% 84.99% 88ms 0.59% PMPI_File_set_view 3ms 0.02% 85.01% 87ms 0.59% VecNorm_Seq 2ms 0.013% 85.02% 87ms 0.59% ompi_datatype_duplicate 22ms 0.15% 85.17% 85ms 0.57% ompi_datatype_set_args 84ms 0.57% 85.74% 84ms 0.57% H5VM_array_offset_pre 22ms 0.15% 85.88% 81ms 0.55% __libc_calloc 81ms 0.55% 86.43% 81ms 0.55% std::vector::operator[] (inline) 80ms 0.54% 86.97% 80ms 0.54% asuint64 (inline) 46ms 0.31% 87.28% 77ms 0.52% TimeStepper::AdvanceOneTimeStep 0 0% 87.28% 76ms 0.51% MPI_Type_create_hindexed