File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3744ms, 87.33% of 4287ms total Dropped 473 nodes (cum <= 21.43ms) flat flat% sum% cum cum% 0 0% 0% 4278ms 99.79% __libc_start_call_main 0 0% 0% 4278ms 99.79% __libc_start_main_impl 0 0% 0% 4278ms 99.79% _start 0 0% 0% 4275ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4275ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4275ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4275ms 99.72% main 0 0% 0% 4236ms 98.81% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4236ms 98.81% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4236ms 98.81% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4229ms 98.65% AbstractCardiacProblem::Solve 0 0% 0% 4217ms 98.37% AbstractDynamicLinearPdeSolver::Solve 13ms 0.3% 0.3% 2358ms 55.00% AbstractCardiacTissue::SolveCellSystems 0 0% 0.3% 1560ms 36.39% LinearSystem::Solve 0 0% 0.3% 1515ms 35.34% KSPSolve 2ms 0.047% 0.35% 1515ms 35.34% KSPSolve_Private 4ms 0.093% 0.44% 1458ms 34.01% KSPSolve_SYMMLQ 36ms 0.84% 1.28% 1341ms 31.28% AbstractCardiacCell::ComputeExceptVoltage 31ms 0.72% 2.01% 1101ms 25.68% AbstractOneStepIvpOdeSolver::InternalSolve 50ms 1.17% 3.17% 931ms 21.72% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.047% 3.22% 890ms 20.76% PCApply 0 0% 3.22% 880ms 20.53% PCApply_BJacobi_Singleblock 256ms 5.97% 9.19% 869ms 20.27% CellLuoRudy1991FromCellML::EvaluateYDerivatives 17ms 0.4% 9.59% 791ms 18.45% AbstractCardiacTissue::UpdateCaches (inline) 351ms 8.19% 17.77% 778ms 18.15% __GI___exp 0 0% 17.77% 750ms 17.49% KSPSolve_PREONLY (partial-inline) 244ms 5.69% 23.47% 748ms 17.45% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.023% 23.49% 701ms 16.35% MatSolve 0 0% 23.49% 701ms 16.35% PCApply_ICC 692ms 16.14% 39.63% 697ms 16.26% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 39.63% 606ms 14.14% KSP_PCApply.lto_priv.18 5ms 0.12% 39.75% 443ms 10.33% MatMult 4ms 0.093% 39.84% 433ms 10.10% MatMult_SeqAIJ 424ms 9.89% 49.73% 433ms 10.10% MatMult_SeqAIJ_Inode (inline) 380ms 8.86% 58.60% 410ms 9.56% __ieee754_exp_fma 0 0% 58.60% 380ms 8.86% KSPConvergedDefault 0 0% 58.60% 363ms 8.47% KSP_PCApply (partial-inline) 3ms 0.07% 58.67% 269ms 6.27% std::pow (inline) 20ms 0.47% 59.13% 266ms 6.20% __pow 49ms 1.14% 60.28% 258ms 6.02% BidomainSolver::SetupLinearSystem 37ms 0.86% 61.14% 246ms 5.74% __ieee754_pow_fma 79ms 1.84% 62.98% 171ms 3.99% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 62.98% 123ms 2.87% MatNullSpaceRemove 122ms 2.85% 65.83% 122ms 2.85% log_inline (inline) 0 0% 65.83% 102ms 2.38% VecDuplicate 81ms 1.89% 67.72% 84ms 1.96% exp_inline (inline) 0 0% 67.72% 82ms 1.91% VecMDot 6ms 0.14% 67.86% 82ms 1.91% VecMXDot_Private 24ms 0.56% 68.42% 74ms 1.73% MPI_Wtime 30ms 0.7% 69.12% 72ms 1.68% TimeStepper::TimeStepper 62ms 1.45% 70.56% 69ms 1.61% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 69ms 1.61% 72.17% 69ms 1.61% ddot_ 1ms 0.023% 72.20% 61ms 1.42% VecDestroy 31ms 0.72% 72.92% 60ms 1.40% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 14ms 0.33% 73.24% 58ms 1.35% PetscLogEventEndDefault 2ms 0.047% 73.29% 58ms 1.35% VecDuplicate_MPI 13ms 0.3% 73.59% 55ms 1.28% PetscLogEventBeginDefault 49ms 1.14% 74.74% 52ms 1.21% VecMDot_Seq 1ms 0.023% 74.76% 50ms 1.17% __GI___clock_gettime 49ms 1.14% 75.90% 49ms 1.14% [[vdso]] 4ms 0.093% 76.00% 48ms 1.12% VecCopy 47ms 1.10% 77.09% 47ms 1.10% TimeStepper::CalculateNextTime 14ms 0.33% 77.42% 46ms 1.07% AbstractCardiacCell::SetVoltage (partial-inline) 5ms 0.12% 77.54% 44ms 1.03% VecCreate 2ms 0.047% 77.58% 44ms 1.03% VecDuplicate_Seq 44ms 1.03% 78.61% 44ms 1.03% [libchaste_heart.so] 3ms 0.07% 78.68% 43ms 1.00% VecAXPY 0 0% 78.68% 43ms 1.00% VecNorm 0 0% 78.68% 42ms 0.98% VecDot 1ms 0.023% 78.70% 42ms 0.98% VecNorm_Seq 1ms 0.023% 78.73% 41ms 0.96% VecMAXPY 40ms 0.93% 79.66% 40ms 0.93% std::isinf (inline) 4ms 0.093% 79.75% 38ms 0.89% PetscMallocA 0 0% 79.75% 38ms 0.89% VecDot_Seq 0 0% 79.75% 38ms 0.89% VecXDot_Seq_Private.constprop.0 36ms 0.84% 80.59% 36ms 0.84% __ieee754_log_fma 0 0% 80.59% 35ms 0.82% CxxTest::RealWorldDescription::setUp 0 0% 80.59% 35ms 0.82% PMPI_Init_thread 0 0% 80.59% 35ms 0.82% PetscInitialize 0 0% 80.59% 35ms 0.82% PetscSetup::setUpWorld 0 0% 80.59% 35ms 0.82% PetscSetupUtils::CommonSetup 0 0% 80.59% 35ms 0.82% PetscSetupUtils::InitialisePetsc 0 0% 80.59% 35ms 0.82% ompi_mpi_init 1ms 0.023% 80.62% 34ms 0.79% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.047% 80.66% 34ms 0.79% PetscMallocAlign (partial-inline) 5ms 0.12% 80.78% 33ms 0.77% AbstractBidomainSolver::CheckCompatibilityCondition 23ms 0.54% 81.32% 33ms 0.77% AbstractOneStepIvpOdeSolver::Solve 13ms 0.3% 81.62% 33ms 0.77% top12 (inline) 0 0% 81.62% 32ms 0.75% VecNorm_MPI 0 0% 81.62% 32ms 0.75% VecNorm_MPI_Default.constprop.0 17ms 0.4% 82.02% 31ms 0.72% AbstractCardiacCell::GetVoltage (partial-inline) 13ms 0.3% 82.32% 31ms 0.72% std::__cxx11::basic_string::basic_string 5ms 0.12% 82.44% 30ms 0.7% VecCreate_MPI_Private 1ms 0.023% 82.46% 29ms 0.68% 22ms 0.51% 82.97% 29ms 0.68% AbstractParameterisedSystem::GetAnyVariable 29ms 0.68% 83.65% 29ms 0.68% __memcpy_avx_unaligned_erms 25ms 0.58% 84.23% 27ms 0.63% AbstractParameterisedSystem::SetAnyVariable 0 0% 84.23% 27ms 0.63% PetscMemcpy (inline) 11ms 0.26% 84.49% 27ms 0.63% TimeStepper::AdvanceOneTimeStep 26ms 0.61% 85.09% 26ms 0.61% DistributedVector::Iterator::operator!= 23ms 0.54% 85.63% 25ms 0.58% VecMAXPY_Seq 0 0% 85.63% 24ms 0.56% VecAXPY_Seq 1ms 0.023% 85.65% 24ms 0.56% VecDestroy_MPI 0 0% 85.65% 24ms 0.56% orte_init 2ms 0.047% 85.70% 23ms 0.54% PetscHeaderCreate_Private 1ms 0.023% 85.72% 23ms 0.54% VecCopy_Seq (partial-inline) 23ms 0.54% 86.26% 23ms 0.54% __memset_avx2_unaligned_erms 23ms 0.54% 86.80% 23ms 0.54% asuint64 (inline) 23ms 0.54% 87.33% 23ms 0.54% daxpy_ 0 0% 87.33% 22ms 0.51% PetscMemzero (inline) 0 0% 87.33% 22ms 0.51% VecSetType