File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110285ms, 91.82% of 120116ms total Dropped 1164 nodes (cum <= 600.58ms) flat flat% sum% cum cum% 0 0% 0% 120099ms 100% __libc_start_call_main 0 0% 0% 120099ms 100% __libc_start_main_impl 0 0% 0% 120099ms 100% _start 0 0% 0% 120096ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120096ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120096ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120096ms 100% main 0 0% 0% 120057ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120057ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120057ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120057ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120057ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120057ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 118812ms 98.91% AbstractCardiacProblem::Solve 7ms 0.0058% 0.0075% 117972ms 98.22% AbstractDynamicLinearPdeSolver::Solve 2ms 0.0017% 0.0092% 65730ms 54.72% LinearSystem::Solve 4ms 0.0033% 0.012% 65164ms 54.25% KSPSolve 12ms 0.01% 0.022% 65161ms 54.25% KSPSolve_Private 14ms 0.012% 0.034% 64719ms 53.88% KSPSolve_SYMMLQ 186ms 0.15% 0.19% 43516ms 36.23% AbstractCardiacTissue::SolveCellSystems 6ms 0.005% 0.19% 36314ms 30.23% PCApply 1ms 0.00083% 0.19% 36302ms 30.22% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.2% 33701ms 28.06% KSPSolve_PREONLY (partial-inline) 1438ms 1.20% 1.39% 32951ms 27.43% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 1.39% 32579ms 27.12% PCApply_ICC 5ms 0.0042% 1.40% 32578ms 27.12% MatSolve 32044ms 26.68% 28.08% 32573ms 27.12% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 3ms 0.0025% 28.08% 31450ms 26.18% KSP_PCApply.lto_priv.18 7103ms 5.91% 33.99% 28531ms 23.75% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0067% 34.00% 22191ms 18.47% MatMult 310ms 0.26% 34.26% 22183ms 18.47% MatMult_SeqAIJ (partial-inline) 21634ms 18.01% 52.27% 22183ms 18.47% MatMult_SeqAIJ_Inode (inline) 1890ms 1.57% 53.84% 14570ms 12.13% CardiacNewtonSolver::Solve 429ms 0.36% 54.20% 9740ms 8.11% AbstractCardiacTissue::UpdateCaches (inline) 1932ms 1.61% 55.81% 9129ms 7.60% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4346ms 3.62% 59.43% 8550ms 7.12% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1105ms 0.92% 60.34% 7763ms 6.46% BidomainSolver::SetupLinearSystem 1087ms 0.9% 61.25% 7221ms 6.01% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.25% 6904ms 5.75% KSP_PCApply (partial-inline) 4ms 0.0033% 61.25% 6343ms 5.28% KSPConvergedDefault 5903ms 4.91% 66.17% 5903ms 4.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 41ms 0.034% 66.20% 3991ms 3.32% std::pow (inline) 3927ms 3.27% 69.47% 3963ms 3.30% __ieee754_log_fma 364ms 0.3% 69.77% 3940ms 3.28% __pow 0 0% 69.77% 3730ms 3.11% boost::numeric::ublas::norm_inf (inline) 2555ms 2.13% 71.90% 3730ms 3.11% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.90% 3730ms 3.11% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.90% 3730ms 3.11% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 395ms 0.33% 72.23% 3541ms 2.95% __ieee754_pow_fma 3508ms 2.92% 75.15% 3508ms 2.92% __memcpy_avx_unaligned_erms 0 0% 75.15% 3477ms 2.89% PetscMemcpy (inline) 5ms 0.0042% 75.15% 3416ms 2.84% MatNullSpaceRemove 21ms 0.017% 75.17% 2989ms 2.49% VecCopy 3ms 0.0025% 75.17% 2967ms 2.47% VecCopy_Seq (partial-inline) 1718ms 1.43% 76.61% 2848ms 2.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2826ms 2.35% 78.96% 2826ms 2.35% ddot_ 16ms 0.013% 78.97% 2468ms 2.05% VecAXPY 5ms 0.0042% 78.98% 2452ms 2.04% VecAXPY_Seq 2431ms 2.02% 81.00% 2431ms 2.02% daxpy_ 3ms 0.0025% 81.00% 2272ms 1.89% VecDot 0 0% 81.00% 2269ms 1.89% VecDot_Seq 1ms 0.00083% 81.00% 2269ms 1.89% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.01% 2101ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00083% 81.01% 1947ms 1.62% VecMDot 15ms 0.012% 81.02% 1946ms 1.62% VecMXDot_Private 1919ms 1.60% 82.62% 1927ms 1.60% VecMDot_Seq 19ms 0.016% 82.63% 1733ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1643ms 1.37% 84.00% 1704ms 1.42% exp_inline (inline) 5ms 0.0042% 84.00% 1464ms 1.22% VecMAXPY 1456ms 1.21% 85.22% 1459ms 1.21% VecMAXPY_Seq 0 0% 85.22% 1432ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1424ms 1.19% 86.40% 1424ms 1.19% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1393ms 1.16% 87.56% 1393ms 1.16% log_inline (inline) 3ms 0.0025% 87.56% 1127ms 0.94% boost::numeric::ublas::matrix_assign (inline) 3ms 0.0025% 87.57% 1125ms 0.94% KSP_RemoveNullSpace (inline) 197ms 0.16% 87.73% 1112ms 0.93% boost::numeric::ublas::indexing_matrix_assign 1100ms 0.92% 88.65% 1100ms 0.92% __memset_avx2_unaligned_erms 0 0% 88.65% 1097ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.65% 1097ms 0.91% CuboidMeshConstructor::Construct 2ms 0.0017% 88.65% 1097ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 0 0% 88.65% 1091ms 0.91% PetscMemzero (inline) 0 0% 88.65% 1084ms 0.9% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.65% 1084ms 0.9% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.65% 1084ms 0.9% boost_numeric_ublas_abs (inline) 1084ms 0.9% 89.55% 1084ms 0.9% std::abs (inline) 778ms 0.65% 90.20% 1032ms 0.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 90.20% 1009ms 0.84% Element::Element 4ms 0.0033% 90.20% 990ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 90.21% 950ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 1ms 0.00083% 90.21% 947ms 0.79% VecDuplicate 894ms 0.74% 90.95% 894ms 0.74% [libchaste_heart.so] 10ms 0.0083% 90.96% 888ms 0.74% boost::numeric::ublas::c_matrix::c_matrix (inline) 7ms 0.0058% 90.96% 887ms 0.74% BidomainAssembler::ComputeMatrixTerm 8ms 0.0067% 90.97% 844ms 0.7% VecScale 5ms 0.0042% 90.98% 838ms 0.7% VecNorm 4ms 0.0033% 90.98% 836ms 0.7% VecScale_Seq 830ms 0.69% 91.67% 830ms 0.69% dscal_ 1ms 0.00083% 91.67% 826ms 0.69% VecNorm_Seq 1ms 0.00083% 91.67% 782ms 0.65% BidomainProblem::WriteOneStep 18ms 0.015% 91.69% 768ms 0.64% PetscMallocA 5ms 0.0042% 91.69% 750ms 0.62% PetscMallocAlign (partial-inline) 0 0% 91.69% 669ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.69% 661ms 0.55% AbstractBidomainSolver::FinaliseLinearSystem 150ms 0.12% 91.82% 659ms 0.55% AbstractBidomainSolver::CheckCompatibilityCondition