File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2862ms, 89.58% of 3195ms total Dropped 379 nodes (cum <= 15.97ms) flat flat% sum% cum cum% 0 0% 0% 3189ms 99.81% __libc_start_call_main 0 0% 0% 3189ms 99.81% __libc_start_main_impl 0 0% 0% 3189ms 99.81% _start 0 0% 0% 3187ms 99.75% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3187ms 99.75% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3187ms 99.75% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3187ms 99.75% main 0 0% 0% 3149ms 98.56% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3149ms 98.56% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3149ms 98.56% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 3146ms 98.47% AbstractCardiacProblem::Solve 0 0% 0% 3140ms 98.28% AbstractDynamicLinearPdeSolver::Solve 6ms 0.19% 0.19% 1509ms 47.23% AbstractCardiacTissue::SolveCellSystems 0 0% 0.19% 1259ms 39.41% LinearSystem::Solve 0 0% 0.19% 1237ms 38.72% KSPSolve 3ms 0.094% 0.28% 1237ms 38.72% KSPSolve_Private 1ms 0.031% 0.31% 1206ms 37.75% KSPSolve_SYMMLQ 11ms 0.34% 0.66% 893ms 27.95% AbstractCardiacCell::ComputeExceptVoltage 12ms 0.38% 1.03% 789ms 24.69% AbstractOneStepIvpOdeSolver::InternalSolve 70ms 2.19% 3.22% 702ms 21.97% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.063% 3.29% 689ms 21.56% MatMult 1ms 0.031% 3.32% 681ms 21.31% MatMult_SeqAIJ 678ms 21.22% 24.54% 681ms 21.31% MatMult_SeqAIJ_Inode (inline) 1ms 0.031% 24.57% 650ms 20.34% PCApply 1ms 0.031% 24.60% 646ms 20.22% PCApply_BJacobi_Singleblock 219ms 6.85% 31.46% 628ms 19.66% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 31.46% 560ms 17.53% KSPSolve_PREONLY (partial-inline) 1ms 0.031% 31.49% 521ms 16.31% MatSolve 0 0% 31.49% 521ms 16.31% PCApply_ICC 518ms 16.21% 47.70% 519ms 16.24% MatSolve_SeqSBAIJ_1_NaturalOrdering 11ms 0.34% 48.04% 516ms 16.15% AbstractCardiacTissue::UpdateCaches (inline) 216ms 6.76% 54.80% 491ms 15.37% CellLuoRudy1991FromCellML::GetIIonic 0 0% 54.80% 476ms 14.90% KSP_PCApply.lto_priv.18 187ms 5.85% 60.66% 476ms 14.90% __GI___exp 23ms 0.72% 61.38% 349ms 10.92% BidomainSolver::SetupLinearSystem 250ms 7.82% 69.20% 252ms 7.89% __ieee754_exp_fma 0 0% 69.20% 229ms 7.17% KSPConvergedDefault 0 0% 69.20% 226ms 7.07% KSP_PCApply (partial-inline) 2ms 0.063% 69.26% 143ms 4.48% std::pow (inline) 10ms 0.31% 69.58% 138ms 4.32% __pow 7ms 0.22% 69.80% 127ms 3.97% __ieee754_pow_fma 105ms 3.29% 73.08% 105ms 3.29% [libchaste_heart.so] 1ms 0.031% 73.11% 91ms 2.85% MatNullSpaceRemove 50ms 1.56% 74.68% 73ms 2.28% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 74.68% 61ms 1.91% VecMDot 8ms 0.25% 74.93% 61ms 1.91% VecMXDot_Private 59ms 1.85% 76.78% 59ms 1.85% log_inline (inline) 52ms 1.63% 78.40% 58ms 1.82% exp_inline (inline) 12ms 0.38% 78.78% 51ms 1.60% MPI_Wtime 0 0% 78.78% 48ms 1.50% VecDuplicate 43ms 1.35% 80.13% 45ms 1.41% VecMDot_Seq 41ms 1.28% 81.41% 41ms 1.28% [libm.so.6] 2ms 0.063% 81.47% 39ms 1.22% __GI___clock_gettime 37ms 1.16% 82.63% 37ms 1.16% [[vdso]] 37ms 1.16% 83.79% 37ms 1.16% ddot_ 0 0% 83.79% 35ms 1.10% CxxTest::RealWorldDescription::setUp 0 0% 83.79% 35ms 1.10% PetscInitialize 3ms 0.094% 83.88% 35ms 1.10% PetscLogEventEndDefault 0 0% 83.88% 35ms 1.10% PetscSetup::setUpWorld 0 0% 83.88% 35ms 1.10% PetscSetupUtils::CommonSetup 0 0% 83.88% 35ms 1.10% PetscSetupUtils::InitialisePetsc 0 0% 83.88% 34ms 1.06% PMPI_Init_thread 0 0% 83.88% 34ms 1.06% ompi_mpi_init 0 0% 83.88% 33ms 1.03% VecDot 5ms 0.16% 84.04% 32ms 1.00% PetscLogEventBeginDefault 1ms 0.031% 84.07% 30ms 0.94% 30ms 0.94% 85.01% 30ms 0.94% TimeStepper::CalculateNextTime 1ms 0.031% 85.04% 30ms 0.94% VecCopy 0 0% 85.04% 30ms 0.94% VecDuplicate_MPI 1ms 0.031% 85.07% 29ms 0.91% VecMAXPY 2ms 0.063% 85.13% 29ms 0.91% VecNorm 8ms 0.25% 85.38% 28ms 0.88% TimeStepper::AdvanceOneTimeStep 6ms 0.19% 85.57% 27ms 0.85% AbstractCardiacCell::SetVoltage (partial-inline) 13ms 0.41% 85.98% 27ms 0.85% TimeStepper::TimeStepper 1ms 0.031% 86.01% 25ms 0.78% VecDestroy 1ms 0.031% 86.04% 25ms 0.78% VecDot_Seq 1ms 0.031% 86.07% 25ms 0.78% VecNorm_Seq 16ms 0.5% 86.57% 24ms 0.75% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.031% 86.60% 24ms 0.75% VecCreate 0 0% 86.60% 24ms 0.75% VecXDot_Seq_Private.constprop.0 14ms 0.44% 87.04% 23ms 0.72% AbstractOneStepIvpOdeSolver::Solve 1ms 0.031% 87.07% 23ms 0.72% VecAXPY 0 0% 87.07% 23ms 0.72% orte_init 10ms 0.31% 87.39% 22ms 0.69% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 87.39% 22ms 0.69% VecNorm_MPI 0 0% 87.39% 22ms 0.69% VecNorm_MPI_Default.constprop.0 22ms 0.69% 88.08% 22ms 0.69% [libchaste_ode.so] 4ms 0.13% 88.20% 21ms 0.66% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 88.20% 21ms 0.66% AbstractBidomainSolver::FinaliseLinearSystem 20ms 0.63% 88.83% 20ms 0.63% __memcpy_avx512_unaligned_erms 5ms 0.16% 88.98% 19ms 0.59% PetscMallocA 18ms 0.56% 89.55% 19ms 0.59% VecMAXPY_Seq 1ms 0.031% 89.58% 18ms 0.56% VecDuplicate_Seq 0 0% 89.58% 17ms 0.53% hwloc_topology_load 0 0% 89.58% 16ms 0.5% PetscMemcpy (inline) 0 0% 89.58% 16ms 0.5% hwloc_linux_get_tid_last_cpu_location