File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3671ms, 88.08% of 4168ms total Dropped 463 nodes (cum <= 20.84ms) flat flat% sum% cum cum% 0 0% 0% 4161ms 99.83% __libc_start_call_main 0 0% 0% 4161ms 99.83% __libc_start_main_impl 0 0% 0% 4161ms 99.83% _start 0 0% 0% 4158ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4158ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4158ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4158ms 99.76% main 0 0% 0% 4119ms 98.82% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4119ms 98.82% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4119ms 98.82% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4111ms 98.63% AbstractCardiacProblem::Solve 3ms 0.072% 0.072% 4092ms 98.18% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.34% 2398ms 57.53% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.36% 1411ms 33.85% LinearSystem::Solve 0 0% 0.36% 1369ms 32.85% KSPSolve 2ms 0.048% 0.41% 1369ms 32.85% KSPSolve_Private 31ms 0.74% 1.15% 1346ms 32.29% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.024% 1.18% 1322ms 31.72% KSPSolve_SYMMLQ 25ms 0.6% 1.78% 1130ms 27.11% AbstractOneStepIvpOdeSolver::InternalSolve 69ms 1.66% 3.43% 961ms 23.06% EulerIvpOdeSolver::CalculateNextYValue 260ms 6.24% 9.67% 874ms 20.97% CellLuoRudy1991FromCellML::EvaluateYDerivatives 31ms 0.74% 10.41% 820ms 19.67% AbstractCardiacTissue::UpdateCaches (inline) 375ms 9.00% 19.41% 800ms 19.19% __GI___exp 2ms 0.048% 19.46% 799ms 19.17% PCApply 0 0% 19.46% 791ms 18.98% PCApply_BJacobi_Singleblock 268ms 6.43% 25.89% 759ms 18.21% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 25.91% 636ms 15.26% KSPSolve_PREONLY (partial-inline) 3ms 0.072% 25.98% 595ms 14.28% MatSolve 0 0% 25.98% 595ms 14.28% PCApply_ICC 584ms 14.01% 40.00% 588ms 14.11% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.00% 587ms 14.08% KSP_PCApply.lto_priv.18 373ms 8.95% 48.94% 404ms 9.69% __ieee754_exp_fma 2ms 0.048% 48.99% 403ms 9.67% MatMult 2ms 0.048% 49.04% 394ms 9.45% MatMult_SeqAIJ 387ms 9.29% 58.33% 394ms 9.45% MatMult_SeqAIJ_Inode (inline) 3ms 0.072% 58.40% 290ms 6.96% KSPConvergedDefault 0 0% 58.40% 266ms 6.38% KSP_PCApply (partial-inline) 44ms 1.06% 59.45% 244ms 5.85% BidomainSolver::SetupLinearSystem 1ms 0.024% 59.48% 243ms 5.83% std::pow (inline) 30ms 0.72% 60.20% 241ms 5.78% __pow 25ms 0.6% 60.80% 211ms 5.06% __ieee754_pow_fma 78ms 1.87% 62.67% 173ms 4.15% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 62.67% 114ms 2.74% MatNullSpaceRemove 0 0% 62.67% 109ms 2.62% VecDuplicate 103ms 2.47% 65.14% 103ms 2.47% log_inline (inline) 18ms 0.43% 65.57% 98ms 2.35% MPI_Wtime 2ms 0.048% 65.62% 80ms 1.92% __GI___clock_gettime 78ms 1.87% 67.49% 78ms 1.87% [[vdso]] 76ms 1.82% 69.31% 76ms 1.82% exp_inline (inline) 0 0% 69.31% 75ms 1.80% VecMDot 5ms 0.12% 69.43% 75ms 1.80% VecMXDot_Private 43ms 1.03% 70.47% 71ms 1.70% TimeStepper::TimeStepper 9ms 0.22% 70.68% 63ms 1.51% PetscLogEventEndDefault 9ms 0.22% 70.90% 62ms 1.49% PetscLogEventBeginDefault 8ms 0.19% 71.09% 62ms 1.49% VecCopy 11ms 0.26% 71.35% 57ms 1.37% PetscMallocA 1ms 0.024% 71.38% 57ms 1.37% VecDestroy 1ms 0.024% 71.40% 56ms 1.34% VecDuplicate_MPI 1ms 0.024% 71.43% 53ms 1.27% VecDuplicate_Seq 8ms 0.19% 71.62% 51ms 1.22% AbstractCardiacCell::SetVoltage (partial-inline) 39ms 0.94% 72.55% 50ms 1.20% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.096% 72.65% 48ms 1.15% VecCreate 18ms 0.43% 73.08% 46ms 1.10% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.072% 73.15% 46ms 1.10% PetscMallocAlign (partial-inline) 46ms 1.10% 74.26% 46ms 1.10% [libchaste_heart.so] 46ms 1.10% 75.36% 46ms 1.10% ddot_ 44ms 1.06% 76.42% 45ms 1.08% VecMDot_Seq 36ms 0.86% 77.28% 44ms 1.06% AbstractOneStepIvpOdeSolver::Solve 40ms 0.96% 78.24% 40ms 0.96% TimeStepper::CalculateNextTime 2ms 0.048% 78.29% 40ms 0.96% VecAXPY 40ms 0.96% 79.25% 40ms 0.96% __memcpy_avx_unaligned_erms 38ms 0.91% 80.16% 39ms 0.94% AbstractParameterisedSystem::SetAnyVariable 5ms 0.12% 80.28% 39ms 0.94% VecMAXPY 1ms 0.024% 80.30% 38ms 0.91% VecDot 36ms 0.86% 81.17% 36ms 0.86% __ieee754_log_fma 36ms 0.86% 82.03% 36ms 0.86% std::isinf (inline) 0 0% 82.03% 35ms 0.84% CxxTest::RealWorldDescription::setUp 0 0% 82.03% 35ms 0.84% PMPI_Init_thread 0 0% 82.03% 35ms 0.84% PetscInitialize 0 0% 82.03% 35ms 0.84% PetscSetup::setUpWorld 0 0% 82.03% 35ms 0.84% PetscSetupUtils::CommonSetup 0 0% 82.03% 35ms 0.84% PetscSetupUtils::InitialisePetsc 0 0% 82.03% 35ms 0.84% ompi_mpi_init 16ms 0.38% 82.41% 35ms 0.84% top12 (inline) 0 0% 82.41% 33ms 0.79% VecDot_Seq 0 0% 82.41% 33ms 0.79% VecXDot_Seq_Private.constprop.0 0 0% 82.41% 32ms 0.77% PetscMemcpy (inline) 11ms 0.26% 82.68% 32ms 0.77% std::__cxx11::basic_string::basic_string 26ms 0.62% 83.30% 31ms 0.74% AbstractParameterisedSystem::GetAnyVariable 14ms 0.34% 83.64% 31ms 0.74% TimeStepper::AdvanceOneTimeStep 0 0% 83.64% 31ms 0.74% VecAXPY_Seq 30ms 0.72% 84.36% 31ms 0.74% std::vector::operator[] (inline) 1ms 0.024% 84.38% 30ms 0.72% 7ms 0.17% 84.55% 30ms 0.72% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 84.55% 30ms 0.72% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 84.55% 30ms 0.72% VecCopy_Seq (partial-inline) 0 0% 84.55% 30ms 0.72% VecSetType 28ms 0.67% 85.22% 28ms 0.67% daxpy_ 13ms 0.31% 85.53% 27ms 0.65% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 85.53% 27ms 0.65% VecCreate_MPI_Private 2ms 0.048% 85.58% 27ms 0.65% VecNorm 2ms 0.048% 85.63% 27ms 0.65% __posix_memalign 4ms 0.096% 85.72% 26ms 0.62% PetscHeaderDestroy_Private 7ms 0.17% 85.89% 26ms 0.62% __GI___libc_malloc 0 0% 85.89% 24ms 0.58% orte_init 0 0% 85.89% 23ms 0.55% PetscMemzero (inline) 23ms 0.55% 86.44% 23ms 0.55% __memset_avx2_unaligned_erms 22ms 0.53% 86.97% 22ms 0.53% DistributedVector::Iterator::operator!= 22ms 0.53% 87.50% 22ms 0.53% asuint64 (inline) 2ms 0.048% 87.55% 21ms 0.5% PetscHeaderCreate_Private 1ms 0.024% 87.57% 21ms 0.5% VecCreate_Seq 21ms 0.5% 88.08% 21ms 0.5% [libm.so.6]