File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110319ms, 91.70% of 120301ms total Dropped 1122 nodes (cum <= 601.50ms) flat flat% sum% cum cum% 0 0% 0% 120283ms 100% __libc_start_call_main 0 0% 0% 120283ms 100% __libc_start_main_impl 0 0% 0% 120283ms 100% _start 0 0% 0% 120280ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120280ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120280ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120280ms 100% main 0 0% 0% 120242ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120242ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120242ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120242ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120242ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 120241ms 100% AbstractConvergenceTester::Converge 6ms 0.005% 0.005% 118993ms 98.91% AbstractCardiacProblem::Solve 6ms 0.005% 0.01% 118203ms 98.26% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0033% 0.013% 66607ms 55.37% LinearSystem::Solve 1ms 0.00083% 0.014% 66096ms 54.94% KSPSolve 11ms 0.0091% 0.023% 66095ms 54.94% KSPSolve_Private 18ms 0.015% 0.038% 65616ms 54.54% KSPSolve_SYMMLQ 195ms 0.16% 0.2% 42653ms 35.46% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.2% 36647ms 30.46% PCApply 2ms 0.0017% 0.2% 36638ms 30.46% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.21% 33967ms 28.24% KSPSolve_PREONLY (partial-inline) 1ms 0.00083% 0.21% 32837ms 27.30% PCApply_ICC 2ms 0.0017% 0.21% 32836ms 27.29% MatSolve 32307ms 26.86% 27.06% 32834ms 27.29% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1375ms 1.14% 28.21% 32705ms 27.19% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0025% 28.21% 31664ms 26.32% KSP_PCApply.lto_priv.18 6967ms 5.79% 34.00% 28238ms 23.47% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0066% 34.01% 22820ms 18.97% MatMult 12ms 0.01% 34.02% 22812ms 18.96% MatMult_SeqAIJ 22271ms 18.51% 52.53% 22809ms 18.96% MatMult_SeqAIJ_Inode (inline) 1951ms 1.62% 54.15% 14721ms 12.24% CardiacNewtonSolver::Solve 333ms 0.28% 54.43% 9114ms 7.58% AbstractCardiacTissue::UpdateCaches (inline) 4421ms 3.67% 58.10% 8689ms 7.22% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2102ms 1.75% 59.85% 8611ms 7.16% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1089ms 0.91% 60.76% 7927ms 6.59% BidomainSolver::SetupLinearSystem 1136ms 0.94% 61.70% 7126ms 5.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00083% 61.70% 6985ms 5.81% KSP_PCApply (partial-inline) 7ms 0.0058% 61.71% 6421ms 5.34% KSPConvergedDefault 5746ms 4.78% 66.48% 5746ms 4.78% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3942ms 3.28% 69.76% 3981ms 3.31% __ieee754_log_fma 0 0% 69.76% 3705ms 3.08% boost::numeric::ublas::norm_inf (inline) 2525ms 2.10% 71.86% 3705ms 3.08% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.86% 3705ms 3.08% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.86% 3705ms 3.08% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3460ms 2.88% 74.73% 3460ms 2.88% __memcpy_avx_unaligned_erms 12ms 0.01% 74.74% 3450ms 2.87% MatNullSpaceRemove 0 0% 74.74% 3409ms 2.83% PetscMemcpy (inline) 24ms 0.02% 74.76% 3156ms 2.62% std::pow (inline) 381ms 0.32% 75.08% 3130ms 2.60% __pow 23ms 0.019% 75.10% 2920ms 2.43% VecCopy 1738ms 1.44% 76.54% 2904ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 4ms 0.0033% 76.55% 2895ms 2.41% VecCopy_Seq (partial-inline) 2822ms 2.35% 78.89% 2822ms 2.35% ddot_ 366ms 0.3% 79.20% 2738ms 2.28% __ieee754_pow_fma 25ms 0.021% 79.22% 2600ms 2.16% VecAXPY 4ms 0.0033% 79.22% 2575ms 2.14% VecAXPY_Seq 2557ms 2.13% 81.35% 2557ms 2.13% daxpy_ 7ms 0.0058% 81.35% 2277ms 1.89% VecDot 3ms 0.0025% 81.36% 2270ms 1.89% VecDot_Seq 2ms 0.0017% 81.36% 2267ms 1.88% VecXDot_Seq_Private.constprop.0 1ms 0.00083% 81.36% 2057ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 5ms 0.0042% 81.36% 1966ms 1.63% VecMDot 13ms 0.011% 81.37% 1961ms 1.63% VecMXDot_Private 1939ms 1.61% 82.99% 1946ms 1.62% VecMDot_Seq 30ms 0.025% 83.01% 1731ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1573ms 1.31% 84.32% 1650ms 1.37% exp_inline (inline) 8ms 0.0066% 84.32% 1472ms 1.22% VecMAXPY 1457ms 1.21% 85.54% 1464ms 1.22% VecMAXPY_Seq 0 0% 85.54% 1405ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1405ms 1.17% 86.70% 1405ms 1.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1194ms 0.99% 87.70% 1194ms 0.99% __memset_avx2_unaligned_erms 0 0% 87.70% 1184ms 0.98% PetscMemzero (inline) 7ms 0.0058% 87.70% 1119ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.70% 1110ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.70% 1110ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.70% 1110ms 0.92% boost_numeric_ublas_abs (inline) 1110ms 0.92% 88.62% 1110ms 0.92% std::abs (inline) 203ms 0.17% 88.79% 1103ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.79% 1093ms 0.91% CuboidMeshConstructor::Construct 0 0% 88.79% 1092ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 88.79% 1092ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0017% 88.80% 1065ms 0.89% KSP_RemoveNullSpace (inline) 791ms 0.66% 89.45% 1041ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0033% 89.46% 1022ms 0.85% VecDuplicate 3ms 0.0025% 89.46% 992ms 0.82% Element::Element 2ms 0.0017% 89.46% 947ms 0.79% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.46% 899ms 0.75% AbstractTetrahedralElement::AbstractTetrahedralElement 9ms 0.0075% 89.47% 878ms 0.73% VecScale 877ms 0.73% 90.20% 877ms 0.73% [libchaste_heart.so] 5ms 0.0042% 90.20% 869ms 0.72% VecScale_Seq 3ms 0.0025% 90.21% 866ms 0.72% boost::numeric::ublas::c_matrix::c_matrix (inline) 862ms 0.72% 90.92% 862ms 0.72% dscal_ 5ms 0.0042% 90.93% 845ms 0.7% BidomainAssembler::ComputeMatrixTerm 12ms 0.01% 90.94% 835ms 0.69% PetscMallocA 5ms 0.0042% 90.94% 823ms 0.68% PetscMallocAlign (partial-inline) 1ms 0.00083% 90.94% 795ms 0.66% VecNorm 1ms 0.00083% 90.94% 786ms 0.65% VecNorm_Seq 0 0% 90.94% 725ms 0.6% BidomainProblem::WriteOneStep 0 0% 90.94% 710ms 0.59% AbstractBidomainSolver::FinaliseLinearSystem 228ms 0.19% 91.13% 707ms 0.59% AbstractBidomainSolver::CheckCompatibilityCondition 686ms 0.57% 91.70% 686ms 0.57% log_inline (inline) 0 0% 91.70% 652ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.70% 610ms 0.51% VecDuplicate_Seq