File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109755ms, 91.83% of 119515ms total Dropped 1161 nodes (cum <= 597.58ms) flat flat% sum% cum cum% 0 0% 0% 119496ms 100% __libc_start_call_main 0 0% 0% 119496ms 100% __libc_start_main_impl 0 0% 0% 119496ms 100% _start 0 0% 0% 119493ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119493ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119493ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119493ms 100% main 0 0% 0% 119459ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119459ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119459ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119459ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119459ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119459ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 118211ms 98.91% AbstractCardiacProblem::Solve 6ms 0.005% 0.0084% 117412ms 98.24% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.011% 65824ms 55.08% LinearSystem::Solve 0 0% 0.011% 65344ms 54.67% KSPSolve 12ms 0.01% 0.021% 65344ms 54.67% KSPSolve_Private 8ms 0.0067% 0.028% 64906ms 54.31% KSPSolve_SYMMLQ 207ms 0.17% 0.2% 42732ms 35.75% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.2% 36945ms 30.91% PCApply 8ms 0.0067% 0.21% 36934ms 30.90% PCApply_BJacobi_Singleblock 0 0% 0.21% 34234ms 28.64% KSPSolve_PREONLY (partial-inline) 1ms 0.00084% 0.21% 33197ms 27.78% PCApply_ICC 3ms 0.0025% 0.21% 33196ms 27.78% MatSolve 32689ms 27.35% 27.56% 33193ms 27.77% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1384ms 1.16% 28.72% 32831ms 27.47% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 28.72% 31924ms 26.71% KSP_PCApply.lto_priv.18 6875ms 5.75% 34.48% 28425ms 23.78% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 11ms 0.0092% 34.48% 22150ms 18.53% MatMult 224ms 0.19% 34.67% 22139ms 18.52% MatMult_SeqAIJ (partial-inline) 21639ms 18.11% 52.78% 22135ms 18.52% MatMult_SeqAIJ_Inode (inline) 1972ms 1.65% 54.43% 14871ms 12.44% CardiacNewtonSolver::Solve 300ms 0.25% 54.68% 9039ms 7.56% AbstractCardiacTissue::UpdateCaches (inline) 4474ms 3.74% 58.42% 8682ms 7.26% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2008ms 1.68% 60.10% 8522ms 7.13% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1140ms 0.95% 61.06% 7870ms 6.58% BidomainSolver::SetupLinearSystem 1158ms 0.97% 62.02% 7355ms 6.15% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0025% 62.03% 6967ms 5.83% KSP_PCApply (partial-inline) 5ms 0.0042% 62.03% 6444ms 5.39% KSPConvergedDefault 5951ms 4.98% 67.01% 5951ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3908ms 3.27% 70.28% 3951ms 3.31% __ieee754_log_fma 0 0% 70.28% 3784ms 3.17% boost::numeric::ublas::norm_inf (inline) 2581ms 2.16% 72.44% 3784ms 3.17% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.44% 3784ms 3.17% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.44% 3784ms 3.17% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.45% 3397ms 2.84% MatNullSpaceRemove 3201ms 2.68% 75.12% 3201ms 2.68% __memcpy_avx_unaligned_erms 0 0% 75.12% 3176ms 2.66% PetscMemcpy (inline) 28ms 0.023% 75.15% 3152ms 2.64% std::pow (inline) 385ms 0.32% 75.47% 3116ms 2.61% __pow 1741ms 1.46% 76.93% 2873ms 2.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 358ms 0.3% 77.23% 2717ms 2.27% __ieee754_pow_fma 16ms 0.013% 77.24% 2699ms 2.26% VecCopy 3ms 0.0025% 77.24% 2679ms 2.24% VecCopy_Seq (partial-inline) 2667ms 2.23% 79.47% 2667ms 2.23% ddot_ 13ms 0.011% 79.48% 2499ms 2.09% VecAXPY 7ms 0.0059% 79.49% 2486ms 2.08% VecAXPY_Seq 2461ms 2.06% 81.55% 2461ms 2.06% daxpy_ 4ms 0.0033% 81.55% 2136ms 1.79% VecDot 1ms 0.00084% 81.55% 2132ms 1.78% VecDot_Seq 1ms 0.00084% 81.55% 2131ms 1.78% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.56% 2072ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 3ms 0.0025% 81.56% 1993ms 1.67% VecMDot 7ms 0.0059% 81.56% 1990ms 1.67% VecMXDot_Private 1977ms 1.65% 83.22% 1980ms 1.66% VecMDot_Seq 24ms 0.02% 83.24% 1734ms 1.45% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1555ms 1.30% 84.54% 1611ms 1.35% exp_inline (inline) 0 0% 84.54% 1420ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 8ms 0.0067% 84.55% 1397ms 1.17% VecMAXPY 1383ms 1.16% 85.70% 1389ms 1.16% VecMAXPY_Seq 1368ms 1.14% 86.85% 1368ms 1.14% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1157ms 0.97% 87.82% 1157ms 0.97% __memset_avx2_unaligned_erms 0 0% 87.82% 1149ms 0.96% PetscMemzero (inline) 4ms 0.0033% 87.82% 1145ms 0.96% boost::numeric::ublas::matrix_assign (inline) 205ms 0.17% 87.99% 1133ms 0.95% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.99% 1105ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.99% 1105ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.99% 1105ms 0.92% boost_numeric_ublas_abs (inline) 1105ms 0.92% 88.92% 1105ms 0.92% std::abs (inline) 0 0% 88.92% 1096ms 0.92% CuboidMeshConstructor::Construct 0 0% 88.92% 1095ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 88.92% 1095ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 786ms 0.66% 89.57% 1033ms 0.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 89.58% 997ms 0.83% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.58% 996ms 0.83% Element::Element 2ms 0.0017% 89.58% 971ms 0.81% VecDuplicate 2ms 0.0017% 89.58% 943ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0033% 89.59% 886ms 0.74% boost::numeric::ublas::c_matrix::c_matrix (inline) 8ms 0.0067% 89.59% 882ms 0.74% BidomainAssembler::ComputeMatrixTerm 7ms 0.0059% 89.60% 881ms 0.74% VecScale 879ms 0.74% 90.33% 879ms 0.74% [libchaste_heart.so] 6ms 0.005% 90.34% 874ms 0.73% VecScale_Seq 867ms 0.73% 91.06% 867ms 0.73% dscal_ 10ms 0.0084% 91.07% 815ms 0.68% PetscMallocA 8ms 0.0067% 91.08% 805ms 0.67% PetscMallocAlign (partial-inline) 2ms 0.0017% 91.08% 794ms 0.66% VecNorm 0 0% 91.08% 784ms 0.66% VecNorm_Seq 0 0% 91.08% 735ms 0.61% BidomainProblem::WriteOneStep 713ms 0.6% 91.68% 713ms 0.6% log_inline (inline) 1ms 0.00084% 91.68% 681ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 185ms 0.15% 91.83% 680ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.83% 652ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)