File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3176ms, 87.90% of 3613ms total Dropped 396 nodes (cum <= 18.07ms) flat flat% sum% cum cum% 0 0% 0% 3606ms 99.81% __libc_start_call_main 0 0% 0% 3606ms 99.81% __libc_start_main_impl 0 0% 0% 3606ms 99.81% _start 0 0% 0% 3603ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3603ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3603ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3603ms 99.72% main 0 0% 0% 3567ms 98.73% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3567ms 98.73% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3567ms 98.73% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 3559ms 98.51% AbstractCardiacProblem::Solve 0 0% 0% 3545ms 98.12% AbstractDynamicLinearPdeSolver::Solve 22ms 0.61% 0.61% 1902ms 52.64% AbstractCardiacTissue::SolveCellSystems 0 0% 0.61% 1286ms 35.59% LinearSystem::Solve 0 0% 0.61% 1260ms 34.87% KSPSolve 0 0% 0.61% 1260ms 34.87% KSPSolve_Private 2ms 0.055% 0.66% 1234ms 34.15% KSPSolve_SYMMLQ 11ms 0.3% 0.97% 1079ms 29.86% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.64% 1.61% 971ms 26.88% AbstractOneStepIvpOdeSolver::InternalSolve 93ms 2.57% 4.18% 824ms 22.81% EulerIvpOdeSolver::CalculateNextYValue 2ms 0.055% 4.23% 733ms 20.29% PCApply 0 0% 4.23% 731ms 20.23% PCApply_BJacobi_Singleblock 264ms 7.31% 11.54% 725ms 20.07% CellLuoRudy1991FromCellML::EvaluateYDerivatives 22ms 0.61% 12.15% 643ms 17.80% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 12.15% 623ms 17.24% KSPSolve_PREONLY (partial-inline) 279ms 7.72% 19.87% 604ms 16.72% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.083% 19.96% 581ms 16.08% MatSolve 0 0% 19.96% 581ms 16.08% PCApply_ICC 571ms 15.80% 35.76% 574ms 15.89% MatSolve_SeqSBAIJ_1_NaturalOrdering 1ms 0.028% 35.79% 551ms 15.25% KSP_PCApply.lto_priv.18 2ms 0.055% 35.84% 533ms 14.75% MatMult 3ms 0.083% 35.93% 526ms 14.56% MatMult_SeqAIJ 522ms 14.45% 50.37% 526ms 14.56% MatMult_SeqAIJ_Inode (inline) 208ms 5.76% 56.13% 524ms 14.50% __GI___exp 38ms 1.05% 57.18% 330ms 9.13% BidomainSolver::SetupLinearSystem 271ms 7.50% 64.68% 274ms 7.58% __ieee754_exp_fma 0 0% 64.68% 251ms 6.95% KSPConvergedDefault 0 0% 64.68% 243ms 6.73% KSP_PCApply (partial-inline) 4ms 0.11% 64.79% 182ms 5.04% std::pow (inline) 9ms 0.25% 65.04% 176ms 4.87% __pow 8ms 0.22% 65.26% 165ms 4.57% __ieee754_pow_fma 74ms 2.05% 67.31% 119ms 3.29% CellLuoRudy1991FromCellML::VerifyStateVariables 116ms 3.21% 70.52% 116ms 3.21% [libchaste_heart.so] 2ms 0.055% 70.58% 99ms 2.74% MatNullSpaceRemove 80ms 2.21% 72.79% 80ms 2.21% log_inline (inline) 0 0% 72.79% 74ms 2.05% VecDuplicate 63ms 1.74% 74.54% 73ms 2.02% exp_inline (inline) 19ms 0.53% 75.06% 63ms 1.74% MPI_Wtime 23ms 0.64% 75.70% 58ms 1.61% TimeStepper::TimeStepper 52ms 1.44% 77.14% 52ms 1.44% [libm.so.6] 0 0% 77.14% 50ms 1.38% VecMDot 2ms 0.055% 77.19% 50ms 1.38% VecMXDot_Private 2ms 0.055% 77.25% 47ms 1.30% VecMAXPY 46ms 1.27% 78.52% 46ms 1.27% ddot_ 44ms 1.22% 79.74% 44ms 1.22% [[vdso]] 1ms 0.028% 79.77% 44ms 1.22% __GI___clock_gettime 43ms 1.19% 80.96% 43ms 1.19% TimeStepper::CalculateNextTime 41ms 1.13% 82.09% 43ms 1.19% VecMDot_Seq 7ms 0.19% 82.29% 42ms 1.16% PetscLogEventEndDefault 0 0% 82.29% 42ms 1.16% VecDot 9ms 0.25% 82.54% 40ms 1.11% PetscLogEventBeginDefault 2ms 0.055% 82.59% 40ms 1.11% VecDuplicate_MPI 0 0% 82.59% 37ms 1.02% VecDot_Seq 0 0% 82.59% 37ms 1.02% VecXDot_Seq_Private.constprop.0 1ms 0.028% 82.62% 35ms 0.97% VecDestroy 0 0% 82.62% 34ms 0.94% KSP_RemoveNullSpace (inline) 0 0% 82.62% 34ms 0.94% VecDuplicate_Seq 0 0% 82.62% 33ms 0.91% CxxTest::RealWorldDescription::setUp 0 0% 82.62% 33ms 0.91% PetscInitialize 0 0% 82.62% 33ms 0.91% PetscSetup::setUpWorld 0 0% 82.62% 33ms 0.91% PetscSetupUtils::CommonSetup 0 0% 82.62% 33ms 0.91% PetscSetupUtils::InitialisePetsc 4ms 0.11% 82.73% 33ms 0.91% VecCopy 1ms 0.028% 82.76% 32ms 0.89% 0 0% 82.76% 32ms 0.89% PMPI_Init_thread 32ms 0.89% 83.64% 32ms 0.89% VecMAXPY_Seq 0 0% 83.64% 32ms 0.89% ompi_mpi_init 16ms 0.44% 84.09% 31ms 0.86% TimeStepper::AdvanceOneTimeStep 6ms 0.17% 84.25% 30ms 0.83% AbstractCardiacCell::SetVoltage (partial-inline) 25ms 0.69% 84.94% 29ms 0.8% AbstractOneStepIvpOdeSolver::Solve 1ms 0.028% 84.97% 29ms 0.8% VecAXPY 28ms 0.77% 85.75% 28ms 0.77% [libchaste_ode.so] 1ms 0.028% 85.77% 27ms 0.75% PetscMallocA 20ms 0.55% 86.33% 26ms 0.72% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.083% 86.41% 26ms 0.72% PMPI_Comm_get_attr 2ms 0.055% 86.47% 26ms 0.72% PetscMallocAlign 1ms 0.028% 86.49% 26ms 0.72% VecCreate_MPI_Private 4ms 0.11% 86.60% 24ms 0.66% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 86.60% 24ms 0.66% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 86.60% 24ms 0.66% VecCreate 0 0% 86.60% 23ms 0.64% PetscMemcpy (inline) 2ms 0.055% 86.66% 23ms 0.64% ompi_attr_get_c 0 0% 86.66% 22ms 0.61% VecNorm 8ms 0.22% 86.88% 22ms 0.61% std::__cxx11::basic_string::basic_string 21ms 0.58% 87.46% 21ms 0.58% __memcpy_avx512_unaligned_erms 2ms 0.055% 87.52% 20ms 0.55% PetscHeaderDestroy_Private 14ms 0.39% 87.90% 19ms 0.53% AbstractParameterisedSystem::GetAnyVariable 0 0% 87.90% 19ms 0.53% VecSetType 0 0% 87.90% 19ms 0.53% orte_init