File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3639ms, 86.58% of 4203ms total Dropped 441 nodes (cum <= 21.02ms) flat flat% sum% cum cum% 0 0% 0% 4197ms 99.86% __libc_start_call_main 0 0% 0% 4197ms 99.86% __libc_start_main_impl 0 0% 0% 4197ms 99.86% _start 0 0% 0% 4194ms 99.79% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4194ms 99.79% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4194ms 99.79% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4194ms 99.79% main 0 0% 0% 4159ms 98.95% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4159ms 98.95% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4158ms 98.93% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4153ms 98.81% AbstractCardiacProblem::Solve 1ms 0.024% 0.048% 4136ms 98.41% AbstractDynamicLinearPdeSolver::Solve 10ms 0.24% 0.29% 2413ms 57.41% AbstractCardiacTissue::SolveCellSystems 55ms 1.31% 1.59% 1426ms 33.93% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.59% 1410ms 33.55% LinearSystem::Solve 0 0% 1.59% 1361ms 32.38% KSPSolve 3ms 0.071% 1.67% 1361ms 32.38% KSPSolve_Private 3ms 0.071% 1.74% 1328ms 31.60% KSPSolve_SYMMLQ 27ms 0.64% 2.38% 1188ms 28.27% AbstractOneStepIvpOdeSolver::InternalSolve 86ms 2.05% 4.43% 977ms 23.25% EulerIvpOdeSolver::CalculateNextYValue 264ms 6.28% 10.71% 875ms 20.82% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 10.71% 800ms 19.03% PCApply 1ms 0.024% 10.73% 798ms 18.99% PCApply_BJacobi_Singleblock 364ms 8.66% 19.39% 791ms 18.82% __GI___exp 23ms 0.55% 19.94% 775ms 18.44% AbstractCardiacTissue::UpdateCaches (inline) 251ms 5.97% 25.91% 725ms 17.25% CellLuoRudy1991FromCellML::GetIIonic 0 0% 25.91% 660ms 15.70% KSPSolve_PREONLY (partial-inline) 3ms 0.071% 25.98% 623ms 14.82% MatSolve 0 0% 25.98% 623ms 14.82% PCApply_ICC 613ms 14.58% 40.57% 617ms 14.68% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.57% 584ms 13.89% KSP_PCApply.lto_priv.18 379ms 9.02% 49.58% 410ms 9.75% __ieee754_exp_fma 5ms 0.12% 49.70% 408ms 9.71% MatMult 7ms 0.17% 49.87% 394ms 9.37% MatMult_SeqAIJ (partial-inline) 385ms 9.16% 59.03% 393ms 9.35% MatMult_SeqAIJ_Inode (inline) 2ms 0.048% 59.08% 288ms 6.85% KSPConvergedDefault 69ms 1.64% 60.72% 271ms 6.45% BidomainSolver::SetupLinearSystem 0 0% 60.72% 269ms 6.40% KSP_PCApply (partial-inline) 3ms 0.071% 60.79% 236ms 5.62% std::pow (inline) 41ms 0.98% 61.77% 233ms 5.54% __pow 23ms 0.55% 62.31% 192ms 4.57% __ieee754_pow_fma 65ms 1.55% 63.86% 162ms 3.85% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.86% 97ms 2.31% VecDuplicate 97ms 2.31% 66.17% 97ms 2.31% log_inline (inline) 2ms 0.048% 66.21% 96ms 2.28% MatNullSpaceRemove 27ms 0.64% 66.86% 92ms 2.19% MPI_Wtime 51ms 1.21% 68.07% 90ms 2.14% TimeStepper::TimeStepper 74ms 1.76% 69.83% 74ms 1.76% ddot_ 67ms 1.59% 71.43% 67ms 1.59% exp_inline (inline) 2ms 0.048% 71.47% 65ms 1.55% __GI___clock_gettime 2ms 0.048% 71.52% 64ms 1.52% VecDot 63ms 1.50% 73.02% 63ms 1.50% [[vdso]] 35ms 0.83% 73.85% 61ms 1.45% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 7ms 0.17% 74.02% 60ms 1.43% VecCopy 0 0% 74.02% 60ms 1.43% VecMDot 1ms 0.024% 74.04% 60ms 1.43% VecMXDot_Private 10ms 0.24% 74.28% 54ms 1.28% AbstractCardiacCell::SetVoltage (partial-inline) 2ms 0.048% 74.33% 54ms 1.28% VecDuplicate_MPI 1ms 0.024% 74.35% 53ms 1.26% PetscLogEventBeginDefault 6ms 0.14% 74.49% 53ms 1.26% PetscLogEventEndDefault 0 0% 74.49% 53ms 1.26% VecDot_Seq 1ms 0.024% 74.52% 53ms 1.26% VecXDot_Seq_Private.constprop.0 3ms 0.071% 74.59% 47ms 1.12% VecCreate 1ms 0.024% 74.61% 43ms 1.02% VecDuplicate_Seq 42ms 1% 75.61% 42ms 1% __memcpy_avx_unaligned_erms 33ms 0.79% 76.40% 41ms 0.98% AbstractOneStepIvpOdeSolver::Solve 3ms 0.071% 76.47% 40ms 0.95% VecAXPY 38ms 0.9% 77.37% 38ms 0.9% TimeStepper::CalculateNextTime 37ms 0.88% 78.25% 38ms 0.9% VecMDot_Seq 38ms 0.9% 79.16% 38ms 0.9% __ieee754_log_fma 1ms 0.024% 79.18% 37ms 0.88% VecNorm 36ms 0.86% 80.04% 36ms 0.86% std::isinf (inline) 34ms 0.81% 80.85% 35ms 0.83% AbstractParameterisedSystem::SetAnyVariable 5ms 0.12% 80.97% 35ms 0.83% PetscMallocA 0 0% 80.97% 35ms 0.83% PetscMemcpy (inline) 3ms 0.071% 81.04% 35ms 0.83% VecDestroy 35ms 0.83% 81.87% 35ms 0.83% [libchaste_heart.so] 14ms 0.33% 82.20% 35ms 0.83% std::__cxx11::basic_string::basic_string 3ms 0.071% 82.27% 34ms 0.81% VecMAXPY 18ms 0.43% 82.70% 34ms 0.81% top12 (inline) 0 0% 82.70% 33ms 0.79% VecNorm_Seq 0 0% 82.70% 32ms 0.76% CxxTest::RealWorldDescription::setUp 0 0% 82.70% 32ms 0.76% PetscInitialize 0 0% 82.70% 32ms 0.76% PetscSetup::setUpWorld 0 0% 82.70% 32ms 0.76% PetscSetupUtils::CommonSetup 0 0% 82.70% 32ms 0.76% PetscSetupUtils::InitialisePetsc 12ms 0.29% 82.99% 31ms 0.74% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.99% 31ms 0.74% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 82.99% 31ms 0.74% PMPI_Init_thread 21ms 0.5% 83.49% 31ms 0.74% TimeStepper::AdvanceOneTimeStep 0 0% 83.49% 31ms 0.74% ompi_mpi_init 26ms 0.62% 84.11% 30ms 0.71% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.024% 84.13% 30ms 0.71% PetscMallocAlign (partial-inline) 0 0% 84.13% 28ms 0.67% VecCopy_Seq (partial-inline) 1ms 0.024% 84.15% 27ms 0.64% PetscHeaderCreate_Private 14ms 0.33% 84.49% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 1ms 0.024% 84.51% 25ms 0.59% VecAXPY_Seq 0 0% 84.51% 24ms 0.57% 18ms 0.43% 84.94% 24ms 0.57% AbstractParameterisedSystem::GetAnyVariable 2ms 0.048% 84.99% 24ms 0.57% VecCreate_MPI_Private 0 0% 84.99% 23ms 0.55% PetscMemzero (inline) 23ms 0.55% 85.53% 23ms 0.55% daxpy_ 22ms 0.52% 86.06% 22ms 0.52% __memset_avx2_unaligned_erms 0 0% 86.06% 22ms 0.52% orte_init 22ms 0.52% 86.58% 22ms 0.52% std::vector::operator[] (inline)