File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 106944ms, 91.54% of 116823ms total Dropped 1133 nodes (cum <= 584.12ms) flat flat% sum% cum cum% 0 0% 0% 116802ms 100% __libc_start_call_main 0 0% 0% 116802ms 100% __libc_start_main_impl 0 0% 0% 116802ms 100% _start 0 0% 0% 116799ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 116799ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 116799ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 116799ms 100% main 0 0% 0% 116764ms 99.95% AbstractConvergenceTester::Converge 0 0% 0% 116764ms 99.95% CxxTest::RealTestDescription::run 0 0% 0% 116764ms 99.95% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 116764ms 99.95% CxxTest::TestRunner::runTest (inline) 0 0% 0% 116764ms 99.95% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 116764ms 99.95% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0026% 0.0026% 115512ms 98.88% AbstractCardiacProblem::Solve 6ms 0.0051% 0.0077% 114615ms 98.11% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0043% 0.012% 63548ms 54.40% LinearSystem::Solve 2ms 0.0017% 0.014% 63020ms 53.94% KSPSolve 11ms 0.0094% 0.023% 63019ms 53.94% KSPSolve_Private 6ms 0.0051% 0.028% 62698ms 53.67% KSPSolve_SYMMLQ 199ms 0.17% 0.2% 42549ms 36.42% AbstractCardiacTissue::SolveCellSystems 3ms 0.0026% 0.2% 35520ms 30.40% PCApply 4ms 0.0034% 0.2% 35512ms 30.40% PCApply_BJacobi_Singleblock 0 0% 0.2% 33136ms 28.36% KSPSolve_PREONLY (partial-inline) 1396ms 1.19% 1.40% 32520ms 27.84% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0026% 1.40% 32164ms 27.53% MatSolve 0 0% 1.40% 32164ms 27.53% PCApply_ICC 31730ms 27.16% 28.56% 32161ms 27.53% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 5ms 0.0043% 28.57% 30627ms 26.22% KSP_PCApply.lto_priv.18 6889ms 5.90% 34.46% 28085ms 24.04% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.006% 34.47% 21125ms 18.08% MatMult 319ms 0.27% 34.74% 21118ms 18.08% MatMult_SeqAIJ (partial-inline) 20498ms 17.55% 52.29% 21010ms 17.98% MatMult_SeqAIJ_Inode (inline) 1930ms 1.65% 53.94% 14441ms 12.36% CardiacNewtonSolver::Solve 284ms 0.24% 54.18% 9177ms 7.86% AbstractCardiacTissue::UpdateCaches (inline) 1963ms 1.68% 55.86% 8691ms 7.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4350ms 3.72% 59.59% 8405ms 7.19% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 922ms 0.79% 60.38% 7366ms 6.31% BidomainSolver::SetupLinearSystem 1126ms 0.96% 61.34% 7307ms 6.25% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0026% 61.34% 6797ms 5.82% KSP_PCApply (partial-inline) 1ms 0.00086% 61.34% 6346ms 5.43% KSPConvergedDefault 5925ms 5.07% 66.42% 5925ms 5.07% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3798ms 3.25% 69.67% 3842ms 3.29% __ieee754_log_fma 0 0% 69.67% 3707ms 3.17% boost::numeric::ublas::norm_inf (inline) 2498ms 2.14% 71.81% 3707ms 3.17% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.81% 3707ms 3.17% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.81% 3707ms 3.17% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 32ms 0.027% 71.83% 3262ms 2.79% std::pow (inline) 398ms 0.34% 72.17% 3224ms 2.76% __pow 5ms 0.0043% 72.18% 3205ms 2.74% MatNullSpaceRemove 3198ms 2.74% 74.92% 3198ms 2.74% __memcpy_avx_unaligned_erms 0 0% 74.92% 3168ms 2.71% PetscMemcpy (inline) 1747ms 1.50% 76.41% 2824ms 2.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 371ms 0.32% 76.73% 2818ms 2.41% __ieee754_pow_fma 2815ms 2.41% 79.14% 2815ms 2.41% ddot_ 20ms 0.017% 79.16% 2768ms 2.37% VecCopy 7ms 0.006% 79.16% 2747ms 2.35% VecCopy_Seq (partial-inline) 4ms 0.0034% 79.17% 2386ms 2.04% VecDot 2ms 0.0017% 79.17% 2382ms 2.04% VecDot_Seq 4ms 0.0034% 79.17% 2380ms 2.04% VecXDot_Seq_Private.constprop.0 7ms 0.006% 79.18% 2209ms 1.89% VecAXPY 12ms 0.01% 79.19% 2202ms 1.88% VecAXPY_Seq 2173ms 1.86% 81.05% 2173ms 1.86% daxpy_ 2ms 0.0017% 81.05% 2077ms 1.78% AbstractFeVolumeIntegralAssembler::DoAssemble 5ms 0.0043% 81.05% 1762ms 1.51% VecMDot 6ms 0.0051% 81.06% 1757ms 1.50% VecMXDot_Private 1741ms 1.49% 82.55% 1749ms 1.50% VecMDot_Seq 32ms 0.027% 82.58% 1727ms 1.48% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1627ms 1.39% 83.97% 1672ms 1.43% exp_inline (inline) 1544ms 1.32% 85.29% 1544ms 1.32% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 3ms 0.0026% 85.29% 1438ms 1.23% VecMAXPY 1426ms 1.22% 86.51% 1435ms 1.23% VecMAXPY_Seq 0 0% 86.51% 1425ms 1.22% AbstractFeAssemblerInterface::AssembleMatrix (inline) 7ms 0.006% 86.52% 1132ms 0.97% boost::numeric::ublas::matrix_assign (inline) 222ms 0.19% 86.71% 1119ms 0.96% boost::numeric::ublas::indexing_matrix_assign 0 0% 86.71% 1110ms 0.95% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.71% 1110ms 0.95% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.71% 1110ms 0.95% boost_numeric_ublas_abs (inline) 1110ms 0.95% 87.66% 1110ms 0.95% std::abs (inline) 0 0% 87.66% 1103ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.66% 1103ms 0.94% CuboidMeshConstructor::Construct 1ms 0.00086% 87.66% 1103ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 780ms 0.67% 88.33% 1046ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1ms 0.00086% 88.33% 1005ms 0.86% Element::Element 2ms 0.0017% 88.33% 977ms 0.84% AbstractTetrahedralElement::CalculateJacobian 10ms 0.0086% 88.34% 974ms 0.83% VecScale 4ms 0.0034% 88.34% 964ms 0.83% VecScale_Seq 955ms 0.82% 89.16% 955ms 0.82% dscal_ 2ms 0.0017% 89.16% 944ms 0.81% AbstractTetrahedralElement::AbstractTetrahedralElement 888ms 0.76% 89.92% 888ms 0.76% __memset_avx2_unaligned_erms 883ms 0.76% 90.68% 883ms 0.76% [libchaste_heart.so] 0 0% 90.68% 875ms 0.75% PetscMemzero (inline) 4ms 0.0034% 90.68% 873ms 0.75% BidomainAssembler::ComputeMatrixTerm 5ms 0.0043% 90.69% 853ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 90.69% 837ms 0.72% AbstractBidomainSolver::FinaliseLinearSystem 243ms 0.21% 90.89% 835ms 0.71% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00086% 90.89% 831ms 0.71% BidomainProblem::WriteOneStep 0 0% 90.89% 770ms 0.66% VecDuplicate 738ms 0.63% 91.53% 738ms 0.63% log_inline (inline) 2ms 0.0017% 91.53% 687ms 0.59% VecNorm 3ms 0.0026% 91.53% 683ms 0.58% VecNorm_Seq 0 0% 91.53% 652ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 7ms 0.006% 91.54% 633ms 0.54% PetscMallocA 5ms 0.0043% 91.54% 626ms 0.54% PetscMallocAlign (partial-inline) 4ms 0.0034% 91.54% 604ms 0.52% H5Dwrite