File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3698ms, 87.59% of 4222ms total Dropped 455 nodes (cum <= 21.11ms) flat flat% sum% cum cum% 0 0% 0% 4212ms 99.76% __libc_start_call_main 0 0% 0% 4212ms 99.76% __libc_start_main_impl 0 0% 0% 4212ms 99.76% _start 0 0% 0% 4209ms 99.69% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4209ms 99.69% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4209ms 99.69% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4209ms 99.69% main 0 0% 0% 4164ms 98.63% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4164ms 98.63% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4164ms 98.63% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4156ms 98.44% AbstractCardiacProblem::Solve 0 0% 0% 4143ms 98.13% AbstractDynamicLinearPdeSolver::Solve 26ms 0.62% 0.62% 2272ms 53.81% AbstractCardiacTissue::SolveCellSystems 0 0% 0.62% 1405ms 33.28% LinearSystem::Solve 1ms 0.024% 0.64% 1365ms 32.33% KSPSolve 4ms 0.095% 0.73% 1365ms 32.33% KSPSolve_Private 1ms 0.024% 0.76% 1321ms 31.29% KSPSolve_SYMMLQ 27ms 0.64% 1.40% 1211ms 28.68% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.54% 1.94% 1031ms 24.42% AbstractOneStepIvpOdeSolver::InternalSolve 50ms 1.18% 3.13% 861ms 20.39% EulerIvpOdeSolver::CalculateNextYValue 25ms 0.59% 3.72% 845ms 20.01% AbstractCardiacTissue::UpdateCaches (inline) 204ms 4.83% 8.55% 801ms 18.97% CellLuoRudy1991FromCellML::EvaluateYDerivatives 5ms 0.12% 8.67% 773ms 18.31% PCApply 1ms 0.024% 8.69% 763ms 18.07% PCApply_BJacobi_Singleblock 280ms 6.63% 15.32% 762ms 18.05% CellLuoRudy1991FromCellML::GetIIonic 349ms 8.27% 23.59% 758ms 17.95% __GI___exp 0 0% 23.59% 632ms 14.97% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 23.61% 588ms 13.93% MatSolve 0 0% 23.61% 588ms 13.93% PCApply_ICC 0 0% 23.61% 581ms 13.76% KSP_PCApply.lto_priv.18 572ms 13.55% 37.16% 580ms 13.74% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 9ms 0.21% 37.38% 505ms 11.96% MatMult 17ms 0.4% 37.78% 480ms 11.37% MatMult_SeqAIJ (partial-inline) 458ms 10.85% 48.63% 474ms 11.23% MatMult_SeqAIJ_Inode (inline) 89ms 2.11% 50.73% 420ms 9.95% BidomainSolver::SetupLinearSystem 322ms 7.63% 58.36% 383ms 9.07% __ieee754_exp_fma 0 0% 58.36% 271ms 6.42% KSP_PCApply (partial-inline) 0 0% 58.36% 268ms 6.35% KSPConvergedDefault 2ms 0.047% 58.41% 247ms 5.85% std::pow (inline) 26ms 0.62% 59.02% 245ms 5.80% __pow 12ms 0.28% 59.31% 219ms 5.19% __ieee754_pow_fma 61ms 1.44% 60.75% 121ms 2.87% CellLuoRudy1991FromCellML::VerifyStateVariables 121ms 2.87% 63.62% 121ms 2.87% log_inline (inline) 2ms 0.047% 63.67% 117ms 2.77% MatNullSpaceRemove 28ms 0.66% 64.33% 100ms 2.37% MPI_Wtime 78ms 1.85% 66.18% 81ms 1.92% exp_inline (inline) 18ms 0.43% 66.60% 78ms 1.85% PetscLogEventEndDefault 0 0% 66.60% 76ms 1.80% VecDuplicate 3ms 0.071% 66.67% 72ms 1.71% __GI___clock_gettime 70ms 1.66% 68.33% 70ms 1.66% ddot_ 26ms 0.62% 68.95% 69ms 1.63% TimeStepper::TimeStepper 69ms 1.63% 70.58% 69ms 1.63% [[vdso]] 0 0% 70.58% 63ms 1.49% VecMDot 4ms 0.095% 70.68% 63ms 1.49% VecMXDot_Private 16ms 0.38% 71.06% 60ms 1.42% AbstractCardiacCell::SetVoltage (partial-inline) 8ms 0.19% 71.25% 60ms 1.42% PetscLogEventBeginDefault 1ms 0.024% 71.27% 60ms 1.42% VecDot 59ms 1.40% 72.67% 59ms 1.40% [libchaste_heart.so] 48ms 1.14% 73.80% 55ms 1.30% top12 (inline) 0 0% 73.80% 52ms 1.23% VecMAXPY 0 0% 73.80% 50ms 1.18% VecDot_Seq 0 0% 73.80% 50ms 1.18% VecXDot_Seq_Private.constprop.0 3ms 0.071% 73.87% 49ms 1.16% VecCopy 48ms 1.14% 75.01% 48ms 1.14% TimeStepper::CalculateNextTime 48ms 1.14% 76.15% 48ms 1.14% __memcpy_avx_unaligned_erms 0 0% 76.15% 47ms 1.11% KSP_RemoveNullSpace (inline) 1ms 0.024% 76.17% 47ms 1.11% VecAXPY 0 0% 76.17% 47ms 1.11% VecDestroy 37ms 0.88% 77.05% 42ms 0.99% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 77.05% 41ms 0.97% CxxTest::RealWorldDescription::setUp 0 0% 77.05% 41ms 0.97% PetscInitialize 0 0% 77.05% 41ms 0.97% PetscSetup::setUpWorld 0 0% 77.05% 41ms 0.97% PetscSetupUtils::CommonSetup 0 0% 77.05% 41ms 0.97% PetscSetupUtils::InitialisePetsc 0 0% 77.05% 40ms 0.95% PMPI_Init_thread 2ms 0.047% 77.10% 40ms 0.95% VecDuplicate_MPI 0 0% 77.10% 40ms 0.95% ompi_mpi_init 2ms 0.047% 77.14% 39ms 0.92% VecNorm 27ms 0.64% 77.78% 38ms 0.9% TimeStepper::AdvanceOneTimeStep 38ms 0.9% 78.68% 38ms 0.9% VecMDot_Seq 37ms 0.88% 79.56% 38ms 0.9% __ieee754_log_fma 29ms 0.69% 80.25% 37ms 0.88% AbstractParameterisedSystem::SetAnyVariable 0 0% 80.25% 36ms 0.85% AbstractBidomainSolver::FinaliseLinearSystem 19ms 0.45% 80.70% 36ms 0.85% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 27ms 0.64% 81.34% 36ms 0.85% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 81.38% 36ms 0.85% VecDuplicate_Seq 10ms 0.24% 81.62% 35ms 0.83% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.047% 81.67% 35ms 0.83% VecCreate 0 0% 81.67% 35ms 0.83% VecNorm_Seq 34ms 0.81% 82.47% 34ms 0.81% DistributedVector::Stripe::operator[] (inline) 1ms 0.024% 82.50% 32ms 0.76% 4ms 0.095% 82.59% 31ms 0.73% PetscMallocA 0 0% 82.59% 31ms 0.73% PetscMemcpy (inline) 29ms 0.69% 83.28% 29ms 0.69% RegularStimulus::GetStimulus 28ms 0.66% 83.94% 29ms 0.69% VecMAXPY_Seq 0 0% 83.94% 28ms 0.66% VecAXPY_Seq 0 0% 83.94% 27ms 0.64% PetscMallocAlign 26ms 0.62% 84.56% 26ms 0.62% [libm.so.6] 26ms 0.62% 85.17% 26ms 0.62% daxpy_ 17ms 0.4% 85.58% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 2ms 0.047% 85.62% 25ms 0.59% VecCreate_MPI_Private 14ms 0.33% 85.95% 25ms 0.59% std::__cxx11::basic_string::basic_string 24ms 0.57% 86.52% 24ms 0.57% DistributedVector::End 1ms 0.024% 86.55% 24ms 0.57% VecCopy_Seq (partial-inline) 0 0% 86.55% 24ms 0.57% VecNorm_MPI 0 0% 86.55% 24ms 0.57% VecNorm_MPI_Default.constprop.0 0 0% 86.55% 23ms 0.54% orte_init 0 0% 86.55% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.52% 87.07% 22ms 0.52% ReplicatableVector::operator[] 0 0% 87.07% 22ms 0.52% __GI__dl_catch_exception 0 0% 87.07% 22ms 0.52% _dl_catch_error 0 0% 87.07% 22ms 0.52% _dlerror_run 22ms 0.52% 87.59% 22ms 0.52% asuint64 (inline)