File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12705ms, 85.66% of 14832ms total Dropped 760 nodes (cum <= 74.16ms) flat flat% sum% cum cum% 0 0% 0% 14822ms 99.93% __libc_start_call_main 0 0% 0% 14822ms 99.93% __libc_start_main_impl 0 0% 0% 14822ms 99.93% _start 0 0% 0% 14819ms 99.91% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14819ms 99.91% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14819ms 99.91% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14819ms 99.91% main 0 0% 0% 14778ms 99.64% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14778ms 99.64% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14778ms 99.64% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0067% 0.0067% 14755ms 99.48% AbstractCardiacProblem::Solve 1ms 0.0067% 0.013% 11364ms 76.62% AbstractDynamicLinearPdeSolver::Solve 82ms 0.55% 0.57% 8934ms 60.23% AbstractCardiacTissue::SolveCellSystems 85ms 0.57% 1.14% 5465ms 36.85% AbstractCardiacCell::ComputeExceptVoltage 121ms 0.82% 1.96% 4808ms 32.42% AbstractOneStepIvpOdeSolver::InternalSolve 160ms 1.08% 3.03% 4121ms 27.78% EulerIvpOdeSolver::CalculateNextYValue 887ms 5.98% 9.01% 3924ms 26.46% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1798ms 12.12% 21.14% 3578ms 24.12% __GI___exp 1ms 0.0067% 21.14% 3320ms 22.38% MonodomainProblem::WriteOneStep 3ms 0.02% 21.16% 3184ms 21.47% H5Dwrite 1ms 0.0067% 21.17% 3178ms 21.43% Hdf5DataWriter::PutVector 2ms 0.013% 21.18% 3160ms 21.31% H5D__write 94ms 0.63% 21.82% 2835ms 19.11% AbstractCardiacTissue::UpdateCaches (inline) 790ms 5.33% 27.14% 2655ms 17.90% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.013% 27.16% 1973ms 13.30% H5D__chunk_collective_write 16ms 0.11% 27.27% 1971ms 13.29% H5F_set_coll_metadata_reads 12ms 0.081% 27.35% 1757ms 11.85% H5FD_s3comms_uriencode 1388ms 9.36% 36.70% 1694ms 11.42% __ieee754_exp_fma 2ms 0.013% 36.72% 1691ms 11.40% LinearSystem::Solve 0 0% 36.72% 1546ms 10.42% KSPSolve 3ms 0.02% 36.74% 1546ms 10.42% KSPSolve_Private 2ms 0.013% 36.75% 1537ms 10.36% KSPSolve_CG 3ms 0.02% 36.77% 1382ms 9.32% H5F_block_write 52ms 0.35% 37.12% 1380ms 9.30% 1ms 0.0067% 37.13% 1379ms 9.30% H5PB_write 1ms 0.0067% 37.14% 1378ms 9.29% H5F__accum_write 0 0% 37.14% 1377ms 9.28% H5FD_write 2ms 0.013% 37.15% 1283ms 8.65% H5D__mpio_select_write 1ms 0.0067% 37.16% 1160ms 7.82% PMPI_File_write_at_all 1138ms 7.67% 44.83% 1141ms 7.69% __GI_pwritev64 5ms 0.034% 44.86% 1079ms 7.27% H5D__chunk_cacheable 5ms 0.034% 44.90% 1004ms 6.77% std::pow (inline) 94ms 0.63% 45.53% 999ms 6.74% __pow 318ms 2.14% 47.67% 939ms 6.33% H5S_select_iterate 93ms 0.63% 48.30% 905ms 6.10% __ieee754_pow_fma 3ms 0.02% 48.32% 902ms 6.08% PCApply 0 0% 48.32% 899ms 6.06% PCApply_BJacobi_Singleblock 0 0% 48.32% 868ms 5.85% KSPSolve_PREONLY 1ms 0.0067% 48.33% 863ms 5.82% PCApply_ICC 1ms 0.0067% 48.33% 862ms 5.81% MatSolve 853ms 5.75% 54.09% 861ms 5.81% MatSolve_SeqSBAIJ_1_NaturalOrdering 319ms 2.15% 56.24% 716ms 4.83% MonodomainSolver::SetupLinearSystem 2ms 0.013% 56.25% 653ms 4.40% KSP_PCApply.lto_priv.7 64ms 0.43% 56.68% 637ms 4.29% H5D__chunk_set_sizes 4ms 0.027% 56.71% 574ms 3.87% MatMult 568ms 3.83% 60.54% 570ms 3.84% MatMult_SeqAIJ 63ms 0.42% 60.96% 482ms 3.25% H5S_mpio_space_type 417ms 2.81% 63.77% 417ms 2.81% log_inline (inline) 198ms 1.33% 65.11% 360ms 2.43% CellLuoRudy1991FromCellML::VerifyStateVariables 346ms 2.33% 67.44% 350ms 2.36% exp_inline (inline) 2ms 0.013% 67.46% 316ms 2.13% KSPConvergedDefault 105ms 0.71% 68.16% 266ms 1.79% TimeStepper::TimeStepper 263ms 1.77% 69.94% 263ms 1.77% [libchaste_heart.so] 1ms 0.0067% 69.94% 256ms 1.73% KSP_PCApply 197ms 1.33% 71.27% 243ms 1.64% top12 (inline) 44ms 0.3% 71.57% 214ms 1.44% AbstractCardiacCell::SetVoltage (partial-inline) 170ms 1.15% 72.71% 210ms 1.42% _int_malloc 40ms 0.27% 72.98% 207ms 1.40% __GI___libc_malloc 9ms 0.061% 73.04% 205ms 1.38% H5VM_chunk_index 7ms 0.047% 73.09% 172ms 1.16% ompi_datatype_destroy 9ms 0.061% 73.15% 169ms 1.14% MPI_Type_free 32ms 0.22% 73.37% 168ms 1.13% __GI___libc_free 165ms 1.11% 74.48% 165ms 1.11% ddot_ 3ms 0.02% 74.50% 165ms 1.11% ompi_datatype_create 158ms 1.07% 75.57% 158ms 1.07% asuint64 (inline) 30ms 0.2% 75.77% 154ms 1.04% H5S_set_version 6ms 0.04% 75.81% 153ms 1.03% ompi_info_register_framework_params 43ms 0.29% 76.10% 151ms 1.02% ompi_datatype_release_args 134ms 0.9% 77.00% 150ms 1.01% AbstractParameterisedSystem::SetAnyVariable 148ms 1% 78.00% 148ms 1% TimeStepper::CalculateNextTime 106ms 0.71% 78.71% 146ms 0.98% AbstractOneStepIvpOdeSolver::Solve 2ms 0.013% 78.73% 141ms 0.95% Hdf5DataWriter::PutUnlimitedVariable 2ms 0.013% 78.74% 135ms 0.91% PMPI_File_set_view 51ms 0.34% 79.09% 135ms 0.91% _int_free 104ms 0.7% 79.79% 131ms 0.88% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 53ms 0.36% 80.14% 124ms 0.84% H5VM_array_calc 122ms 0.82% 80.97% 122ms 0.82% __memcpy_avx_unaligned_erms 51ms 0.34% 81.31% 118ms 0.8% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.013% 81.32% 114ms 0.77% VecNorm 51ms 0.34% 81.67% 108ms 0.73% H5S_hyper_add_span_element 106ms 0.71% 82.38% 106ms 0.71% H5VM_chunk_index_scaled 2ms 0.013% 82.40% 106ms 0.71% VecNorm_Seq 0 0% 82.40% 104ms 0.7% VecDuplicate 3ms 0.02% 82.42% 104ms 0.7% VecDuplicate_MPI 7ms 0.047% 82.46% 101ms 0.68% PMPI_Type_create_resized 0 0% 82.46% 99ms 0.67% VecTDot 0 0% 82.46% 98ms 0.66% VecTDot_Seq 0 0% 82.46% 98ms 0.66% VecXDot_Seq_Private.constprop.0 0 0% 82.46% 93ms 0.63% std::vector::_M_assign_aux (inline) 0 0% 82.46% 93ms 0.63% std::vector::assign (inline) 92ms 0.62% 83.08% 92ms 0.62% H5VM_array_offset_pre 71ms 0.48% 83.56% 91ms 0.61% AbstractParameterisedSystem::GetAnyVariable 91ms 0.61% 84.18% 91ms 0.61% __ieee754_log_fma 2ms 0.013% 84.19% 88ms 0.59% ompi_datatype_duplicate 86ms 0.58% 84.77% 86ms 0.58% [libm.so.6] 22ms 0.15% 84.92% 86ms 0.58% __libc_calloc 51ms 0.34% 85.26% 82ms 0.55% TimeStepper::AdvanceOneTimeStep 3ms 0.02% 85.28% 80ms 0.54% opal_datatype_create_desc 15ms 0.1% 85.38% 80ms 0.54% std::__copy_move::__copy_m (inline) 0 0% 85.38% 80ms 0.54% std::__copy_move_a (inline) 0 0% 85.38% 80ms 0.54% std::__copy_move_a1 (inline) 0 0% 85.38% 80ms 0.54% std::__copy_move_a2 (inline) 0 0% 85.38% 80ms 0.54% std::copy (inline) 35ms 0.24% 85.62% 78ms 0.53% AbstractCardiacCell::GetVoltage (partial-inline) 2ms 0.013% 85.63% 78ms 0.53% PMPI_Type_vector 1ms 0.0067% 85.64% 76ms 0.51% H5D__chunk_allocated 0 0% 85.64% 75ms 0.51% H5D__select_write 3ms 0.02% 85.66% 75ms 0.51% H5Dgather