File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3501ms, 86.85% of 4031ms total Dropped 471 nodes (cum <= 20.16ms) flat flat% sum% cum cum% 0 0% 0% 4025ms 99.85% __libc_start_call_main 0 0% 0% 4025ms 99.85% __libc_start_main_impl 0 0% 0% 4025ms 99.85% _start 0 0% 0% 4022ms 99.78% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4022ms 99.78% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4022ms 99.78% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4022ms 99.78% main 0 0% 0% 3986ms 98.88% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3986ms 98.88% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3986ms 98.88% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 3979ms 98.71% AbstractCardiacProblem::Solve 1ms 0.025% 0.025% 3965ms 98.36% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.025% 1971ms 48.90% LinearSystem::Solve 0 0% 0.025% 1927ms 47.80% KSPSolve 5ms 0.12% 0.15% 1927ms 47.80% KSPSolve_Private 5ms 0.12% 0.27% 1882ms 46.69% KSPSolve_CG 14ms 0.35% 0.62% 1669ms 41.40% AbstractCardiacTissue::SolveCellSystems 0 0% 0.62% 1183ms 29.35% PCApply 1ms 0.025% 0.65% 1175ms 29.15% PCApply_BJacobi_Singleblock 69ms 1.71% 2.36% 1156ms 28.68% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 181ms 4.49% 6.85% 1004ms 24.91% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 1ms 0.025% 6.87% 984ms 24.41% KSPSolve_PREONLY (partial-inline) 0 0% 6.87% 942ms 23.37% KSP_PCApply.lto_priv.7 7ms 0.17% 7.05% 927ms 23.00% MatSolve 0 0% 7.05% 927ms 23.00% PCApply_ICC 906ms 22.48% 29.52% 910ms 22.58% MatSolve_SeqSBAIJ_1_NaturalOrdering 4ms 0.099% 29.62% 549ms 13.62% MatMult 4ms 0.099% 29.72% 539ms 13.37% MatMult_SeqAIJ 533ms 13.22% 42.94% 539ms 13.37% MatMult_SeqAIJ_Inode (inline) 60ms 1.49% 44.43% 479ms 11.88% CardiacNewtonSolver::Solve 9ms 0.22% 44.65% 465ms 11.54% AbstractCardiacTissue::UpdateCaches (inline) 135ms 3.35% 48.00% 441ms 10.94% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 0 0% 48.00% 351ms 8.71% KSP_PCApply (partial-inline) 3ms 0.074% 48.08% 349ms 8.66% KSPConvergedDefault 58ms 1.44% 49.52% 284ms 7.05% BidomainSolver::SetupLinearSystem 29ms 0.72% 50.24% 278ms 6.90% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 145ms 3.60% 53.83% 276ms 6.85% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 240ms 5.95% 59.79% 240ms 5.95% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 29ms 0.72% 60.51% 223ms 5.53% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 60.51% 193ms 4.79% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 47ms 1.17% 61.67% 193ms 4.79% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 1ms 0.025% 61.70% 187ms 4.64% MatNullSpaceRemove 133ms 3.30% 65.00% 136ms 3.37% __ieee754_log_fma 0 0% 65.00% 129ms 3.20% boost::numeric::ublas::norm_inf (inline) 91ms 2.26% 67.25% 129ms 3.20% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 67.25% 129ms 3.20% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 67.25% 129ms 3.20% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 124ms 3.08% 70.33% 124ms 3.08% ddot_ 53ms 1.31% 71.64% 122ms 3.03% __GI___exp 0 0% 71.64% 110ms 2.73% VecDuplicate 1ms 0.025% 71.67% 108ms 2.68% VecMDot 13ms 0.32% 71.99% 107ms 2.65% VecMXDot_Private 17ms 0.42% 72.41% 95ms 2.36% __pow 0 0% 72.41% 95ms 2.36% std::pow (inline) 22ms 0.55% 72.96% 93ms 2.31% MPI_Wtime 2ms 0.05% 73.01% 80ms 1.98% VecNorm 3ms 0.074% 73.08% 79ms 1.96% VecTDot 5ms 0.12% 73.21% 78ms 1.94% VecMAXPY 9ms 0.22% 73.43% 78ms 1.94% __ieee754_pow_fma 45ms 1.12% 74.55% 77ms 1.91% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 3ms 0.074% 74.62% 71ms 1.76% __GI___clock_gettime 0 0% 74.62% 69ms 1.71% VecTDot_Seq 1ms 0.025% 74.65% 69ms 1.71% VecXDot_Seq_Private.constprop.0 68ms 1.69% 76.33% 68ms 1.69% [[vdso]] 14ms 0.35% 76.68% 67ms 1.66% PetscLogEventEndDefault 62ms 1.54% 78.22% 67ms 1.66% __ieee754_exp_fma 0 0% 78.22% 66ms 1.64% VecNorm_Seq 58ms 1.44% 79.66% 62ms 1.54% VecMDot_Seq 9ms 0.22% 79.88% 61ms 1.51% PetscLogEventBeginDefault 1ms 0.025% 79.91% 59ms 1.46% VecDuplicate_Seq 56ms 1.39% 81.29% 57ms 1.41% exp_inline (inline) 1ms 0.025% 81.32% 55ms 1.36% VecDestroy 5ms 0.12% 81.44% 52ms 1.29% PetscMallocA 3ms 0.074% 81.52% 51ms 1.27% VecCreate 1ms 0.025% 81.54% 51ms 1.27% VecDuplicate_MPI 4ms 0.099% 81.64% 47ms 1.17% PetscMallocAlign (partial-inline) 44ms 1.09% 82.73% 46ms 1.14% VecMAXPY_Seq 4ms 0.099% 82.83% 44ms 1.09% PetscTimeSubtract (inline) 40ms 0.99% 83.83% 40ms 0.99% [libchaste_heart.so] 0 0% 83.83% 36ms 0.89% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 83.83% 36ms 0.89% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 83.83% 36ms 0.89% boost_numeric_ublas_abs (inline) 36ms 0.89% 84.72% 36ms 0.89% std::abs (inline) 2ms 0.05% 84.77% 35ms 0.87% AbstractBidomainSolver::FinaliseLinearSystem 10ms 0.25% 85.02% 32ms 0.79% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 85.02% 32ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 85.02% 32ms 0.79% PetscInitialize 0 0% 85.02% 32ms 0.79% PetscSetup::setUpWorld 0 0% 85.02% 32ms 0.79% PetscSetupUtils::CommonSetup 0 0% 85.02% 32ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 85.02% 31ms 0.77% PMPI_Init_thread 0 0% 85.02% 31ms 0.77% PetscMemzero (inline) 0 0% 85.02% 31ms 0.77% ompi_mpi_init 30ms 0.74% 85.76% 30ms 0.74% __memset_avx2_unaligned_erms 3ms 0.074% 85.83% 29ms 0.72% VecCopy 1ms 0.025% 85.86% 28ms 0.69% VecSetType 0 0% 85.86% 27ms 0.67% 2ms 0.05% 85.91% 26ms 0.65% PetscHeaderDestroy_Private 1ms 0.025% 85.93% 26ms 0.65% VecCreate_MPI_Private 5ms 0.12% 86.06% 25ms 0.62% PetscHeaderCreate_Private 24ms 0.6% 86.65% 24ms 0.6% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 5ms 0.12% 86.78% 24ms 0.6% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 3ms 0.074% 86.85% 24ms 0.6% VecAXPY 0 0% 86.85% 24ms 0.6% VecCreate_Seq 0 0% 86.85% 22ms 0.55% orte_init 0 0% 86.85% 21ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble