File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 107304ms, 91.84% of 116832ms total Dropped 1142 nodes (cum <= 584.16ms) flat flat% sum% cum cum% 0 0% 0% 116820ms 100% __libc_start_call_main 0 0% 0% 116820ms 100% __libc_start_main_impl 0 0% 0% 116820ms 100% _start 0 0% 0% 116817ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 116817ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 116817ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 116817ms 100% main 0 0% 0% 116786ms 100% AbstractConvergenceTester::Converge 0 0% 0% 116786ms 100% CxxTest::RealTestDescription::run 0 0% 0% 116786ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 116786ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 116786ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 116786ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 5ms 0.0043% 0.0043% 115549ms 98.90% AbstractCardiacProblem::Solve 9ms 0.0077% 0.012% 114724ms 98.20% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0043% 0.016% 63584ms 54.42% LinearSystem::Solve 2ms 0.0017% 0.018% 63090ms 54.00% KSPSolve 4ms 0.0034% 0.021% 63089ms 54.00% KSPSolve_Private 10ms 0.0086% 0.03% 62715ms 53.68% KSPSolve_SYMMLQ 201ms 0.17% 0.2% 42455ms 36.34% AbstractCardiacTissue::SolveCellSystems 4ms 0.0034% 0.21% 35476ms 30.36% PCApply 3ms 0.0026% 0.21% 35466ms 30.36% PCApply_BJacobi_Singleblock 0 0% 0.21% 33370ms 28.56% KSPSolve_PREONLY (partial-inline) 1402ms 1.20% 1.41% 32657ms 27.95% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00086% 1.41% 32249ms 27.60% PCApply_ICC 3ms 0.0026% 1.41% 32248ms 27.60% MatSolve 31780ms 27.20% 28.61% 32245ms 27.60% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 3ms 0.0026% 28.62% 30547ms 26.15% KSP_PCApply.lto_priv.18 6923ms 5.93% 34.54% 28266ms 24.19% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0068% 34.55% 21035ms 18.00% MatMult 303ms 0.26% 34.81% 21027ms 18.00% MatMult_SeqAIJ (partial-inline) 20520ms 17.56% 52.37% 21026ms 18.00% MatMult_SeqAIJ_Inode (inline) 2098ms 1.80% 54.17% 14673ms 12.56% CardiacNewtonSolver::Solve 304ms 0.26% 54.43% 8955ms 7.66% AbstractCardiacTissue::UpdateCaches (inline) 4437ms 3.80% 58.22% 8485ms 7.26% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1831ms 1.57% 59.79% 8464ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1075ms 0.92% 60.71% 7583ms 6.49% BidomainSolver::SetupLinearSystem 1177ms 1.01% 61.72% 7283ms 6.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0026% 61.72% 6886ms 5.89% KSP_PCApply (partial-inline) 7ms 0.006% 61.73% 6351ms 5.44% KSPConvergedDefault 5823ms 4.98% 66.71% 5823ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3762ms 3.22% 69.93% 3803ms 3.26% __ieee754_log_fma 0 0% 69.93% 3731ms 3.19% boost::numeric::ublas::norm_inf (inline) 2528ms 2.16% 72.10% 3731ms 3.19% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.10% 3731ms 3.19% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.10% 3731ms 3.19% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 17ms 0.015% 72.11% 3213ms 2.75% std::pow (inline) 6ms 0.0051% 72.12% 3199ms 2.74% MatNullSpaceRemove 402ms 0.34% 72.46% 3189ms 2.73% __pow 3077ms 2.63% 75.09% 3077ms 2.63% __memcpy_avx_unaligned_erms 3065ms 2.62% 77.72% 3065ms 2.62% ddot_ 0 0% 77.72% 3053ms 2.61% PetscMemcpy (inline) 1718ms 1.47% 79.19% 2816ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 381ms 0.33% 79.51% 2781ms 2.38% __ieee754_pow_fma 20ms 0.017% 79.53% 2616ms 2.24% VecCopy 6ms 0.0051% 79.54% 2594ms 2.22% VecCopy_Seq (partial-inline) 6ms 0.0051% 79.54% 2546ms 2.18% VecDot 1ms 0.00086% 79.54% 2540ms 2.17% VecDot_Seq 3ms 0.0026% 79.54% 2539ms 2.17% VecXDot_Seq_Private.constprop.0 11ms 0.0094% 79.55% 2293ms 1.96% VecAXPY 5ms 0.0043% 79.56% 2282ms 1.95% VecAXPY_Seq 2261ms 1.94% 81.49% 2261ms 1.94% daxpy_ 5ms 0.0043% 81.50% 2066ms 1.77% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00086% 81.50% 1753ms 1.50% VecMDot 7ms 0.006% 81.50% 1752ms 1.50% VecMXDot_Private 1737ms 1.49% 82.99% 1740ms 1.49% VecMDot_Seq 26ms 0.022% 83.01% 1710ms 1.46% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1586ms 1.36% 84.37% 1658ms 1.42% exp_inline (inline) 1474ms 1.26% 85.63% 1474ms 1.26% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 7ms 0.006% 85.64% 1440ms 1.23% VecMAXPY 1427ms 1.22% 86.86% 1433ms 1.23% VecMAXPY_Seq 0 0% 86.86% 1415ms 1.21% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.86% 1108ms 0.95% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.86% 1108ms 0.95% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.86% 1108ms 0.95% boost_numeric_ublas_abs (inline) 1108ms 0.95% 87.81% 1108ms 0.95% std::abs (inline) 7ms 0.006% 87.81% 1098ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.81% 1094ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.81% 1094ms 0.94% CuboidMeshConstructor::Construct 2ms 0.0017% 87.82% 1094ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 211ms 0.18% 88.00% 1080ms 0.92% boost::numeric::ublas::indexing_matrix_assign 810ms 0.69% 88.69% 1066ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0026% 88.69% 1062ms 0.91% KSP_RemoveNullSpace (inline) 2ms 0.0017% 88.69% 1000ms 0.86% Element::Element 3ms 0.0026% 88.70% 959ms 0.82% AbstractTetrahedralElement::CalculateJacobian 10ms 0.0086% 88.71% 951ms 0.81% VecScale 2ms 0.0017% 88.71% 941ms 0.81% VecScale_Seq 938ms 0.8% 89.51% 938ms 0.8% dscal_ 2ms 0.0017% 89.51% 937ms 0.8% AbstractTetrahedralElement::AbstractTetrahedralElement 911ms 0.78% 90.29% 911ms 0.78% __memset_avx2_unaligned_erms 0 0% 90.29% 899ms 0.77% PetscMemzero (inline) 855ms 0.73% 91.02% 855ms 0.73% [libchaste_heart.so] 3ms 0.0026% 91.03% 837ms 0.72% BidomainAssembler::ComputeMatrixTerm 7ms 0.006% 91.03% 823ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.00086% 91.03% 802ms 0.69% VecDuplicate 1ms 0.00086% 91.03% 795ms 0.68% AbstractBidomainSolver::FinaliseLinearSystem 232ms 0.2% 91.23% 791ms 0.68% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.23% 765ms 0.65% BidomainProblem::WriteOneStep 1ms 0.00086% 91.23% 764ms 0.65% VecNorm 0 0% 91.23% 755ms 0.65% VecNorm_Seq 702ms 0.6% 91.83% 702ms 0.6% log_inline (inline) 7ms 0.006% 91.84% 681ms 0.58% PetscMallocA 6ms 0.0051% 91.84% 674ms 0.58% PetscMallocAlign (partial-inline) 0 0% 91.84% 651ms 0.56% AbstractFeAssemblerInterface::Assemble (inline)