File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 346ms, 90.81% of 381ms total Dropped 173 nodes (cum <= 1.91ms) flat flat% sum% cum cum% 0 0% 0% 373ms 97.90% __libc_start_call_main 0 0% 0% 373ms 97.90% __libc_start_main_impl 0 0% 0% 373ms 97.90% _start 0 0% 0% 370ms 97.11% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 370ms 97.11% CxxTest::TestRunner::runAllTests 0 0% 0% 370ms 97.11% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 370ms 97.11% main 0 0% 0% 335ms 87.93% CxxTest::RealTestDescription::run 0 0% 0% 335ms 87.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 335ms 87.93% CxxTest::TestRunner::runTest (inline) 0 0% 0% 335ms 87.93% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 335ms 87.93% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 329ms 86.35% AbstractCardiacProblem::Solve 0 0% 0% 329ms 86.35% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 300ms 78.74% LinearSystem::Solve 0 0% 0% 299ms 78.48% KSPSolve 0 0% 0% 299ms 78.48% KSPSolve_CG 0 0% 0% 299ms 78.48% KSPSolve_Private 1ms 0.26% 0.26% 181ms 47.51% KSP_PCApply.lto_priv.7 0 0% 0.26% 172ms 45.14% PCApply 0 0% 0.26% 172ms 45.14% PCApply_BJacobi_Singleblock 0 0% 0.26% 143ms 37.53% KSPSolve_PREONLY (partial-inline) 0 0% 0.26% 135ms 35.43% MatSolve 134ms 35.17% 35.43% 135ms 35.43% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 35.43% 135ms 35.43% PCApply_ICC 0 0% 35.43% 63ms 16.54% MatMult 3ms 0.79% 36.22% 63ms 16.54% MatMult_SeqAIJ (partial-inline) 60ms 15.75% 51.97% 61ms 16.01% MatMult_SeqAIJ_Inode (inline) 33ms 8.66% 60.63% 33ms 8.66% ddot_ 0 0% 60.63% 32ms 8.40% CxxTest::RealWorldDescription::setUp 0 0% 60.63% 32ms 8.40% PMPI_Init_thread 0 0% 60.63% 32ms 8.40% PetscInitialize 0 0% 60.63% 32ms 8.40% PetscSetup::setUpWorld 0 0% 60.63% 32ms 8.40% PetscSetupUtils::CommonSetup 0 0% 60.63% 32ms 8.40% PetscSetupUtils::InitialisePetsc 0 0% 60.63% 32ms 8.40% ompi_mpi_init 0 0% 60.63% 30ms 7.87% MatNullSpaceRemove 0 0% 60.63% 27ms 7.09% 0 0% 60.63% 24ms 6.30% AbstractCardiacTissue::SolveCellSystems 0 0% 60.63% 23ms 6.04% VecTDot 0 0% 60.63% 23ms 6.04% VecTDot_Seq 0 0% 60.63% 23ms 6.04% VecXDot_Seq_Private.constprop.0 0 0% 60.63% 19ms 4.99% orte_init 0 0% 60.63% 17ms 4.46% VecMDot 17ms 4.46% 65.09% 17ms 4.46% VecMDot_Seq 0 0% 65.09% 17ms 4.46% VecMXDot_Private 1ms 0.26% 65.35% 17ms 4.46% _dlerror_run 0 0% 65.35% 16ms 4.20% __GI__dl_catch_exception 0 0% 65.35% 16ms 4.20% _dl_catch_error 0 0% 65.35% 15ms 3.94% AbstractCardiacCell::ComputeExceptVoltage 0 0% 65.35% 15ms 3.94% mca_base_framework_open 0 0% 65.35% 15ms 3.94% opal_stackframe_output 1ms 0.26% 65.62% 14ms 3.67% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 65.62% 14ms 3.67% ___dlopen 0 0% 65.62% 14ms 3.67% dlopen_implementation (inline) 0 0% 65.62% 13ms 3.41% VecMAXPY 13ms 3.41% 69.03% 13ms 3.41% VecMAXPY_Seq 0 0% 69.03% 13ms 3.41% _dl_open 0 0% 69.03% 13ms 3.41% dlopen_doit 0 0% 69.03% 13ms 3.41% mca_base_component_find 1ms 0.26% 69.29% 13ms 3.41% mca_base_component_repository_open 0 0% 69.29% 13ms 3.41% mca_base_framework_components_register 0 0% 69.29% 13ms 3.41% mca_base_framework_register 0 0% 69.29% 12ms 3.15% KSP_PCApply (partial-inline) 0 0% 69.29% 12ms 3.15% VecAYPX 12ms 3.15% 72.44% 12ms 3.15% VecAYPX_Seq 0 0% 72.44% 12ms 3.15% dl_open_worker 3ms 0.79% 73.23% 11ms 2.89% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 73.23% 11ms 2.89% EulerIvpOdeSolver::CalculateNextYValue 0 0% 73.23% 11ms 2.89% _dl_init 0 0% 73.23% 11ms 2.89% call_init (inline) 0 0% 73.23% 10ms 2.62% VecNorm 0 0% 73.23% 10ms 2.62% VecNorm_Seq 0 0% 73.23% 9ms 2.36% hwloc_topology_load 0 0% 73.23% 8ms 2.10% dl_open_worker_begin 0 0% 73.23% 8ms 2.10% hwloc_linux_get_tid_last_cpu_location 0 0% 73.23% 7ms 1.84% VecAXPY 0 0% 73.23% 7ms 1.84% VecAXPY_Seq 4ms 1.05% 74.28% 7ms 1.84% __GI___exp 0 0% 74.28% 7ms 1.84% _dl_start_user 7ms 1.84% 76.12% 7ms 1.84% daxpy_ 0 0% 76.12% 7ms 1.84% mca_base_framework_components_open 0 0% 76.12% 7ms 1.84% mca_topo_base_dist_graph_neighbors_count 0 0% 76.12% 6ms 1.57% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.52% 76.64% 6ms 1.57% CellLuoRudy1991FromCellML::GetIIonic 0 0% 76.64% 6ms 1.57% VecDuplicate 0 0% 76.64% 6ms 1.57% VecDuplicate_Seq 0 0% 76.64% 6ms 1.57% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 76.64% 6ms 1.57% boost::serialization::singleton::get_instance 0 0% 76.64% 5ms 1.31% KSPConvergedDefault 0 0% 76.64% 5ms 1.31% PetscMemcpy (inline) 0 0% 76.64% 5ms 1.31% VecDestroy 2ms 0.52% 77.17% 5ms 1.31% __cxa_finalize 5ms 1.31% 78.48% 5ms 1.31% __memcpy_evex_unaligned_erms 0 0% 78.48% 5ms 1.31% _dl_call_fini 0 0% 78.48% 5ms 1.31% _dl_lookup_symbol_x 1ms 0.26% 78.74% 5ms 1.31% _dl_map_object 1ms 0.26% 79.00% 5ms 1.31% _dl_runtime_resolve_xsavec 0 0% 79.00% 4ms 1.05% AbstractCardiacProblem::Initialise 0 0% 79.00% 4ms 1.05% BidomainSolver::SetupLinearSystem 0 0% 79.00% 4ms 1.05% VecCreate 4ms 1.05% 80.05% 4ms 1.05% __GI___clock_nanosleep 4ms 1.05% 81.10% 4ms 1.05% __GI___libc_read 0 0% 81.10% 4ms 1.05% __GI___nanosleep 0 0% 81.10% 4ms 1.05% _dl_fixup 1ms 0.26% 81.36% 4ms 1.05% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 81.36% 4ms 1.05% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 81.36% 4ms 1.05% opal_hwloc_base_get_topology 0 0% 81.36% 4ms 1.05% orte_ess_base_proc_binding 0 0% 81.36% 4ms 1.05% usleep 0 0% 81.36% 3ms 0.79% CxxTest::RealWorldDescription::tearDown 0 0% 81.36% 3ms 0.79% PetscFinalize 0 0% 81.36% 3ms 0.79% PetscHeaderDestroy_Private 0 0% 81.36% 3ms 0.79% PetscSetup::tearDownWorld 0 0% 81.36% 3ms 0.79% PetscSetupUtils::CommonFinalize 0 0% 81.36% 3ms 0.79% VecCopy 0 0% 81.36% 3ms 0.79% VecCopy_Seq (partial-inline) 1ms 0.26% 81.63% 3ms 0.79% VecSet 0 0% 81.63% 3ms 0.79% __GI_exit 0 0% 81.63% 3ms 0.79% __dlclose 0 0% 81.63% 3ms 0.79% __ieee754_pow_fma 0 0% 81.63% 3ms 0.79% __pow 0 0% 81.63% 3ms 0.79% __run_exit_handlers 0 0% 81.63% 3ms 0.79% _dl_close 0 0% 81.63% 3ms 0.79% _dl_close_worker (inline) 0 0% 81.63% 3ms 0.79% _dl_fini 0 0% 81.63% 3ms 0.79% _dl_open_relocate_one_object (inline) 0 0% 81.63% 3ms 0.79% _dl_relocate_object 1ms 0.26% 81.89% 3ms 0.79% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 3ms 0.79% 82.68% 3ms 0.79% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 3ms 0.79% 83.46% 3ms 0.79% do_lookup_x 0 0% 83.46% 3ms 0.79% mca_base_component_repository_release 0 0% 83.46% 3ms 0.79% ompi_mpi_finalize 0 0% 83.46% 3ms 0.79% std::pow (inline) 0 0% 83.46% 2ms 0.52% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 83.46% 2ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.52% 83.99% 2ms 0.52% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 83.99% 2ms 0.52% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 83.99% 2ms 0.52% KSP_RemoveNullSpace (inline) 0 0% 83.99% 2ms 0.52% PMPI_Comm_get_attr 1ms 0.26% 84.25% 2ms 0.52% PetscHeaderCreate_Private 1ms 0.26% 84.51% 2ms 0.52% PetscMallocA 0 0% 84.51% 2ms 0.52% PetscMemzero (inline) 2ms 0.52% 85.04% 2ms 0.52% TimeStepper::CalculateNextTime 0 0% 85.04% 2ms 0.52% TimeStepper::TimeStepper 0 0% 85.04% 2ms 0.52% VecSetType 0 0% 85.04% 2ms 0.52% VecSet_Seq (partial-inline) 0 0% 85.04% 2ms 0.52% XOpenDisplay 0 0% 85.04% 2ms 0.52% [hwloc_gl.so] 2ms 0.52% 85.56% 2ms 0.52% [libchaste_heart.so] 2ms 0.52% 86.09% 2ms 0.52% [libchaste_mesh.so] 0 0% 86.09% 2ms 0.52% [libxcb.so.1.1.0] 0 0% 86.09% 2ms 0.52% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.09% 2ms 0.52% _XConnectXCB 1ms 0.26% 86.35% 2ms 0.52% __GI___close 2ms 0.52% 86.88% 2ms 0.52% __GI___libc_malloc 2ms 0.52% 87.40% 2ms 0.52% __GI_mprotect 2ms 0.52% 87.93% 2ms 0.52% __GI_munmap 2ms 0.52% 88.45% 2ms 0.52% __ieee754_exp_fma 1ms 0.26% 88.71% 2ms 0.52% __libc_calloc 2ms 0.52% 89.24% 2ms 0.52% __memset_evex_unaligned_erms 0 0% 89.24% 2ms 0.52% _dl_map_object_deps 0 0% 89.24% 2ms 0.52% _dl_map_object_from_fd 2ms 0.52% 89.76% 2ms 0.52% _dl_new_hash (inline) 0 0% 89.76% 2ms 0.52% _dl_protect_relro (inline) 0 0% 89.76% 2ms 0.52% boost::serialization::void_cast_detail::void_caster::recursive_unregister 0 0% 89.76% 2ms 0.52% boost::serialization::void_cast_detail::void_caster_primitive::~void_caster_primitive (inline) 0 0% 89.76% 2ms 0.52% hwloc_alloc_setup_object 0 0% 89.76% 2ms 0.52% hwloc_backend_enable 2ms 0.52% 90.29% 2ms 0.52% log_inline (inline) 0 0% 90.29% 2ms 0.52% mca_base_components_close 0 0% 90.29% 2ms 0.52% mca_base_framework_close 0 0% 90.29% 2ms 0.52% ompi_attr_get_c 0 0% 90.29% 2ms 0.52% openaux 0 0% 90.29% 2ms 0.52% std::_Rb_tree::_M_insert_unique 2ms 0.52% 90.81% 2ms 0.52% std::_Rb_tree_increment 0 0% 90.81% 2ms 0.52% std::set::insert (inline) 0 0% 90.81% 2ms 0.52% xcb_connect_to_display_with_auth_info