File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 340ms, 90.67% of 375ms total Dropped 128 nodes (cum <= 1.88ms) flat flat% sum% cum cum% 0 0% 0% 365ms 97.33% __libc_start_call_main 0 0% 0% 365ms 97.33% __libc_start_main_impl 0 0% 0% 365ms 97.33% _start 0 0% 0% 363ms 96.80% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 363ms 96.80% CxxTest::TestRunner::runAllTests 0 0% 0% 363ms 96.80% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 363ms 96.80% main 0 0% 0% 331ms 88.27% CxxTest::RealTestDescription::run 0 0% 0% 331ms 88.27% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 331ms 88.27% CxxTest::TestRunner::runTest (inline) 0 0% 0% 331ms 88.27% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 331ms 88.27% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 328ms 87.47% AbstractCardiacProblem::Solve 0 0% 0% 328ms 87.47% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 304ms 81.07% LinearSystem::Solve 0 0% 0% 303ms 80.80% KSPSolve 0 0% 0% 303ms 80.80% KSPSolve_CG 0 0% 0% 303ms 80.80% KSPSolve_Private 0 0% 0% 185ms 49.33% KSP_PCApply.lto_priv.7 0 0% 0% 185ms 49.33% PCApply 0 0% 0% 185ms 49.33% PCApply_BJacobi_Singleblock 0 0% 0% 149ms 39.73% KSPSolve_PREONLY (partial-inline) 0 0% 0% 145ms 38.67% MatSolve 140ms 37.33% 37.33% 145ms 38.67% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 37.33% 145ms 38.67% PCApply_ICC 0 0% 37.33% 56ms 14.93% MatMult 4ms 1.07% 38.40% 56ms 14.93% MatMult_SeqAIJ 52ms 13.87% 52.27% 52ms 13.87% MatMult_SeqAIJ_Inode (inline) 41ms 10.93% 63.20% 41ms 10.93% ddot_ 0 0% 63.20% 29ms 7.73% CxxTest::RealWorldDescription::setUp 0 0% 63.20% 29ms 7.73% PetscInitialize 0 0% 63.20% 29ms 7.73% PetscSetup::setUpWorld 0 0% 63.20% 29ms 7.73% PetscSetupUtils::CommonSetup 0 0% 63.20% 29ms 7.73% PetscSetupUtils::InitialisePetsc 0 0% 63.20% 28ms 7.47% PMPI_Init_thread 0 0% 63.20% 28ms 7.47% ompi_mpi_init 2ms 0.53% 63.73% 26ms 6.93% 0 0% 63.73% 22ms 5.87% MatNullSpaceRemove 0 0% 63.73% 22ms 5.87% VecTDot 0 0% 63.73% 22ms 5.87% VecTDot_Seq 0 0% 63.73% 22ms 5.87% VecXDot_Seq_Private.constprop.0 1ms 0.27% 64.00% 19ms 5.07% AbstractCardiacTissue::SolveCellSystems 0 0% 64.00% 19ms 5.07% VecNorm 0 0% 64.00% 19ms 5.07% VecNorm_Seq 0 0% 64.00% 19ms 5.07% orte_init 0 0% 64.00% 13ms 3.47% hwloc_topology_load 0 0% 64.00% 12ms 3.20% __GI__dl_catch_exception 0 0% 64.00% 12ms 3.20% _dl_catch_error 0 0% 64.00% 12ms 3.20% _dlerror_run 0 0% 64.00% 12ms 3.20% hwloc_linux_get_tid_last_cpu_location 0 0% 64.00% 11ms 2.93% AbstractCardiacCell::ComputeExceptVoltage 0 0% 64.00% 11ms 2.93% VecMAXPY 11ms 2.93% 66.93% 11ms 2.93% VecMAXPY_Seq 0 0% 66.93% 11ms 2.93% VecMDot 11ms 2.93% 69.87% 11ms 2.93% VecMDot_Seq 0 0% 69.87% 11ms 2.93% VecMXDot_Private 0 0% 69.87% 11ms 2.93% mca_base_framework_open 0 0% 69.87% 11ms 2.93% mca_base_framework_register 0 0% 69.87% 11ms 2.93% opal_stackframe_output 0 0% 69.87% 10ms 2.67% mca_base_framework_components_register 0 0% 69.87% 9ms 2.40% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 69.87% 9ms 2.40% VecAXPY 0 0% 69.87% 9ms 2.40% VecAXPY_Seq 0 0% 69.87% 9ms 2.40% VecDuplicate 1ms 0.27% 70.13% 9ms 2.40% VecDuplicate_Seq 0 0% 70.13% 9ms 2.40% _dl_init 0 0% 70.13% 9ms 2.40% call_init (inline) 9ms 2.40% 72.53% 9ms 2.40% daxpy_ 0 0% 72.53% 8ms 2.13% KSP_PCApply (partial-inline) 0 0% 72.53% 8ms 2.13% PetscMemcpy (inline) 0 0% 72.53% 8ms 2.13% ___dlopen 8ms 2.13% 74.67% 8ms 2.13% __memcpy_avx512_unaligned_erms 0 0% 74.67% 8ms 2.13% _dl_open 0 0% 74.67% 8ms 2.13% dl_open_worker 0 0% 74.67% 8ms 2.13% dlopen_doit 0 0% 74.67% 8ms 2.13% dlopen_implementation (inline) 0 0% 74.67% 7ms 1.87% VecAYPX 7ms 1.87% 76.53% 7ms 1.87% VecAYPX_Seq 0 0% 76.53% 7ms 1.87% _dl_start_user 0 0% 76.53% 7ms 1.87% mca_base_component_find 0 0% 76.53% 7ms 1.87% mca_base_component_repository_open 2ms 0.53% 77.07% 6ms 1.60% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 77.07% 6ms 1.60% EulerIvpOdeSolver::CalculateNextYValue 0 0% 77.07% 6ms 1.60% KSPConvergedDefault 3ms 0.8% 77.87% 6ms 1.60% __GI___exp 6ms 1.60% 79.47% 6ms 1.60% __GI___libc_read 0 0% 79.47% 6ms 1.60% dl_open_worker_begin 1ms 0.27% 79.73% 5ms 1.33% VecCopy 0 0% 79.73% 5ms 1.33% _dl_lookup_symbol_x 2ms 0.53% 80.27% 5ms 1.33% boost::serialization::singleton::get_instance 0 0% 80.27% 5ms 1.33% opal_hwloc_base_get_topology 0 0% 80.27% 5ms 1.33% orte_ess_base_proc_binding 0 0% 80.27% 4ms 1.07% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.53% 80.80% 4ms 1.07% BidomainSolver::SetupLinearSystem 1ms 0.27% 81.07% 4ms 1.07% CellLuoRudy1991FromCellML::GetIIonic 0 0% 81.07% 4ms 1.07% PetscMemzero (inline) 0 0% 81.07% 4ms 1.07% VecCopy_Seq (partial-inline) 0 0% 81.07% 4ms 1.07% VecCreate 0 0% 81.07% 4ms 1.07% VecSetType 0 0% 81.07% 4ms 1.07% __dlclose 4ms 1.07% 82.13% 4ms 1.07% __memset_avx512_unaligned_erms 0 0% 82.13% 4ms 1.07% _dl_close 1ms 0.27% 82.40% 4ms 1.07% _dl_close_worker (inline) 0 0% 82.40% 4ms 1.07% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 3ms 0.8% 83.20% 4ms 1.07% do_lookup_x 0 0% 83.20% 4ms 1.07% mca_base_var_group_register 0 0% 83.20% 4ms 1.07% mca_base_var_register 0 0% 83.20% 3ms 0.8% AbstractCardiacProblem::Initialise 1ms 0.27% 83.47% 3ms 0.8% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 83.47% 3ms 0.8% CxxTest::RealWorldDescription::tearDown 0 0% 83.47% 3ms 0.8% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 83.47% 3ms 0.8% PetscFinalize 1ms 0.27% 83.73% 3ms 0.8% PetscHeaderDestroy_Private 0 0% 83.73% 3ms 0.8% PetscSetup::tearDownWorld 0 0% 83.73% 3ms 0.8% PetscSetupUtils::CommonFinalize 3ms 0.8% 84.53% 3ms 0.8% TimeStepper::TimeStepper 0 0% 84.53% 3ms 0.8% VecCreate_Seq 0 0% 84.53% 3ms 0.8% VecDestroy 0 0% 84.53% 3ms 0.8% [hwloc_pci.so] 0 0% 84.53% 3ms 0.8% [libpciaccess.so.0.11.1] 3ms 0.8% 85.33% 3ms 0.8% __GI_munmap 0 0% 85.33% 3ms 0.8% _dl_map_object 0 0% 85.33% 3ms 0.8% _dl_open_relocate_one_object (inline) 0 0% 85.33% 3ms 0.8% _dl_relocate_object 0 0% 85.33% 3ms 0.8% _dl_unmap 0 0% 85.33% 3ms 0.8% _dl_unmap_segments (inline) 0 0% 85.33% 3ms 0.8% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 85.33% 3ms 0.8% clone3 0 0% 85.33% 3ms 0.8% elf_dynamic_do_Rela (inline) 0 0% 85.33% 3ms 0.8% elf_machine_rela (inline) 0 0% 85.33% 3ms 0.8% event_base_loop 0 0% 85.33% 3ms 0.8% event_del_nolock_ 0 0% 85.33% 3ms 0.8% mca_base_component_repository_release 0 0% 85.33% 3ms 0.8% mca_base_component_var_register 0 0% 85.33% 3ms 0.8% mca_base_components_close 0 0% 85.33% 3ms 0.8% mca_base_framework_components_open 0 0% 85.33% 3ms 0.8% mca_topo_base_dist_graph_neighbors_count 0 0% 85.33% 3ms 0.8% ompi_mpi_finalize 0 0% 85.33% 3ms 0.8% pci_get_strings 0 0% 85.33% 3ms 0.8% resolve_map (inline) 0 0% 85.33% 3ms 0.8% start_thread 0 0% 85.33% 2ms 0.53% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 85.33% 2ms 0.53% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 85.33% 2ms 0.53% PMPI_Comm_get_attr 0 0% 85.33% 2ms 0.53% PetscCommDuplicate 0 0% 85.33% 2ms 0.53% PetscHeaderCreate_Private 0 0% 85.33% 2ms 0.53% PetscMallocA 0 0% 85.33% 2ms 0.53% PetscMallocAlign (partial-inline) 0 0% 85.33% 2ms 0.53% VecSet 0 0% 85.33% 2ms 0.53% VecSet_Seq (partial-inline) 0 0% 85.33% 2ms 0.53% XOpenDisplay 0 0% 85.33% 2ms 0.53% [hwloc_gl.so] 2ms 0.53% 85.87% 2ms 0.53% [libchaste_heart.so] 2ms 0.53% 86.40% 2ms 0.53% [libm.so.6] 0 0% 86.40% 2ms 0.53% [libxcb.so.1.1.0] 0 0% 86.40% 2ms 0.53% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.40% 2ms 0.53% _XConnectXCB 2ms 0.53% 86.93% 2ms 0.53% __GI___clock_nanosleep 2ms 0.53% 87.47% 2ms 0.53% __GI___close 0 0% 87.47% 2ms 0.53% __GI___libc_malloc 0 0% 87.47% 2ms 0.53% __GI___nanosleep 0 0% 87.47% 2ms 0.53% __GI_exit 0 0% 87.47% 2ms 0.53% __cxa_finalize 0 0% 87.47% 2ms 0.53% __run_exit_handlers 2ms 0.53% 88.00% 2ms 0.53% __strchr_evex 0 0% 88.00% 2ms 0.53% _dl_call_fini 0 0% 88.00% 2ms 0.53% _dl_fini 0 0% 88.00% 2ms 0.53% _dl_fixup 0 0% 88.00% 2ms 0.53% _dl_map_object_deps 0 0% 88.00% 2ms 0.53% _dl_map_object_from_fd 0 0% 88.00% 2ms 0.53% _dl_map_segments (inline) 0 0% 88.00% 2ms 0.53% _dl_runtime_resolve_xsavec 2ms 0.53% 88.53% 2ms 0.53% _int_malloc 0 0% 88.53% 2ms 0.53% boost::numeric::ublas::c_matrix::c_matrix (inline) 1ms 0.27% 88.80% 2ms 0.53% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.80% 2ms 0.53% boost::numeric::ublas::matrix_assign (inline) 0 0% 88.80% 2ms 0.53% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 88.80% 2ms 0.53% boost::serialization::singleton::get_const_instance (inline) 1ms 0.27% 89.07% 2ms 0.53% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 89.07% 2ms 0.53% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 89.07% 2ms 0.53% mca_base_framework_close 0 0% 89.07% 2ms 0.53% mca_base_select 2ms 0.53% 89.60% 2ms 0.53% memset 0 0% 89.60% 2ms 0.53% ompi_attr_get_c 2ms 0.53% 90.13% 2ms 0.53% opal_hash_table_get_value_uint32 0 0% 90.13% 2ms 0.53% opal_timer_base_get_freq 0 0% 90.13% 2ms 0.53% openaux 2ms 0.53% 90.67% 2ms 0.53% strcmp 0 0% 90.67% 2ms 0.53% usleep 0 0% 90.67% 2ms 0.53% xcb_connect_to_display_with_auth_info