File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 2807ms, 84.80% of 3310ms total Dropped 442 nodes (cum <= 16.55ms) flat flat% sum% cum cum% 0 0% 0% 3302ms 99.76% __libc_start_call_main 0 0% 0% 3302ms 99.76% __libc_start_main_impl 0 0% 0% 3302ms 99.76% _start 0 0% 0% 3299ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3299ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3299ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3299ms 99.67% main 0 0% 0% 3262ms 98.55% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3262ms 98.55% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3262ms 98.55% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 3255ms 98.34% AbstractCardiacProblem::Solve 0 0% 0% 3241ms 97.92% AbstractDynamicLinearPdeSolver::Solve 1ms 0.03% 0.03% 1704ms 51.48% LinearSystem::Solve 1ms 0.03% 0.06% 1644ms 49.67% KSPSolve 3ms 0.091% 0.15% 1643ms 49.64% KSPSolve_Private 1ms 0.03% 0.18% 1590ms 48.04% KSPSolve_SYMMLQ 5ms 0.15% 0.33% 1251ms 37.79% AbstractCardiacTissue::SolveCellSystems 5ms 0.15% 0.48% 1030ms 31.12% PCApply 0 0% 0.48% 1016ms 30.69% PCApply_BJacobi_Singleblock 0 0% 0.48% 885ms 26.74% KSPSolve_PREONLY (partial-inline) 4ms 0.12% 0.6% 829ms 25.05% MatSolve 0 0% 0.6% 829ms 25.05% PCApply_ICC 815ms 24.62% 25.23% 821ms 24.80% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 25.23% 802ms 24.23% KSP_PCApply.lto_priv.18 15ms 0.45% 25.68% 706ms 21.33% AbstractCardiacCell::ComputeExceptVoltage 19ms 0.57% 26.25% 611ms 18.46% AbstractOneStepIvpOdeSolver::InternalSolve 39ms 1.18% 27.43% 507ms 15.32% EulerIvpOdeSolver::CalculateNextYValue 116ms 3.50% 30.94% 463ms 13.99% CellLuoRudy1991FromCellML::EvaluateYDerivatives 13ms 0.39% 31.33% 452ms 13.66% AbstractCardiacTissue::UpdateCaches (inline) 207ms 6.25% 37.58% 445ms 13.44% __GI___exp 2ms 0.06% 37.64% 418ms 12.63% MatMult 146ms 4.41% 42.05% 417ms 12.60% CellLuoRudy1991FromCellML::GetIIonic 12ms 0.36% 42.42% 407ms 12.30% MatMult_SeqAIJ 393ms 11.87% 54.29% 398ms 12.02% MatMult_SeqAIJ_Inode (inline) 0 0% 54.29% 310ms 9.37% KSP_PCApply (partial-inline) 0 0% 54.29% 308ms 9.31% KSPConvergedDefault 54ms 1.63% 55.92% 236ms 7.13% BidomainSolver::SetupLinearSystem 188ms 5.68% 61.60% 227ms 6.86% __ieee754_exp_fma 15ms 0.45% 62.05% 131ms 3.96% __pow 0 0% 62.05% 131ms 3.96% std::pow (inline) 0 0% 62.05% 123ms 3.72% MatNullSpaceRemove 6ms 0.18% 62.24% 116ms 3.50% __ieee754_pow_fma 2ms 0.06% 62.30% 108ms 3.26% VecDuplicate 25ms 0.76% 63.05% 107ms 3.23% MPI_Wtime 0 0% 63.05% 86ms 2.60% VecMDot 5ms 0.15% 63.20% 86ms 2.60% VecMXDot_Private 2ms 0.06% 63.26% 82ms 2.48% __GI___clock_gettime 80ms 2.42% 65.68% 80ms 2.42% [[vdso]] 14ms 0.42% 66.10% 75ms 2.27% PetscLogEventBeginDefault 15ms 0.45% 66.56% 74ms 2.24% PetscLogEventEndDefault 70ms 2.11% 68.67% 70ms 2.11% ddot_ 33ms 1% 69.67% 65ms 1.96% CellLuoRudy1991FromCellML::VerifyStateVariables 2ms 0.06% 69.73% 61ms 1.84% VecCopy 60ms 1.81% 71.54% 61ms 1.84% VecMDot_Seq 2ms 0.06% 71.60% 56ms 1.69% VecDuplicate_MPI 6ms 0.18% 71.78% 54ms 1.63% VecNorm 54ms 1.63% 73.41% 54ms 1.63% log_inline (inline) 52ms 1.57% 74.98% 53ms 1.60% exp_inline (inline) 2ms 0.06% 75.05% 52ms 1.57% VecDot 0 0% 75.05% 51ms 1.54% PetscTimeSubtract (inline) 2ms 0.06% 75.11% 50ms 1.51% VecDuplicate_Seq 1ms 0.03% 75.14% 48ms 1.45% VecCreate 48ms 1.45% 76.59% 48ms 1.45% __memcpy_avx512_unaligned_erms 0 0% 76.59% 45ms 1.36% KSP_RemoveNullSpace (inline) 4ms 0.12% 76.71% 45ms 1.36% PetscMallocA 1ms 0.03% 76.74% 44ms 1.33% VecAXPY 0 0% 76.74% 43ms 1.30% VecDot_Seq 0 0% 76.74% 43ms 1.30% VecXDot_Seq_Private.constprop.0 11ms 0.33% 77.07% 42ms 1.27% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 77.07% 42ms 1.27% AbstractBidomainSolver::FinaliseLinearSystem 3ms 0.091% 77.16% 41ms 1.24% PetscMallocAlign 0 0% 77.16% 40ms 1.21% VecNorm_Seq 0 0% 77.16% 39ms 1.18% PetscMemcpy (inline) 12ms 0.36% 77.52% 37ms 1.12% TimeStepper::TimeStepper 2ms 0.06% 77.58% 37ms 1.12% VecDestroy 1ms 0.03% 77.61% 37ms 1.12% VecMAXPY 0 0% 77.61% 34ms 1.03% CxxTest::RealWorldDescription::setUp 0 0% 77.61% 34ms 1.03% PMPI_Init_thread 0 0% 77.61% 34ms 1.03% PetscInitialize 0 0% 77.61% 34ms 1.03% PetscSetup::setUpWorld 0 0% 77.61% 34ms 1.03% PetscSetupUtils::CommonSetup 0 0% 77.61% 34ms 1.03% PetscSetupUtils::InitialisePetsc 0 0% 77.61% 34ms 1.03% ompi_mpi_init 33ms 1% 78.61% 33ms 1% TimeStepper::CalculateNextTime 0 0% 78.61% 30ms 0.91% VecCopy_Seq (partial-inline) 27ms 0.82% 79.43% 30ms 0.91% top12 (inline) 1ms 0.03% 79.46% 29ms 0.88% 3ms 0.091% 79.55% 29ms 0.88% VecCreate_MPI_Private 1ms 0.03% 79.58% 29ms 0.88% __posix_memalign 9ms 0.27% 79.85% 28ms 0.85% __GI___libc_malloc 1ms 0.03% 79.88% 26ms 0.79% PetscHeaderCreate_Private 26ms 0.79% 80.66% 26ms 0.79% [libchaste_heart.so] 3ms 0.091% 80.76% 25ms 0.76% VecSetType 11ms 0.33% 81.09% 24ms 0.73% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 81.09% 24ms 0.73% VecNorm_MPI 0 0% 81.09% 24ms 0.73% VecNorm_MPI_Default.constprop.0 5ms 0.15% 81.24% 23ms 0.69% AbstractCardiacCell::SetVoltage (partial-inline) 23ms 0.69% 81.93% 23ms 0.69% DistributedVector::Iterator::operator!= 20ms 0.6% 82.54% 22ms 0.66% VecMAXPY_Seq 0 0% 82.54% 22ms 0.66% orte_init 21ms 0.63% 83.17% 21ms 0.63% __ieee754_log_fma 0 0% 83.17% 20ms 0.6% VecAXPY_Seq 18ms 0.54% 83.72% 19ms 0.57% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.06% 83.78% 19ms 0.57% VecCreate_Seq 3ms 0.091% 83.87% 19ms 0.57% VecSet 1ms 0.03% 83.90% 19ms 0.57% VecStashCreate_Private 0 0% 83.90% 18ms 0.54% VecScale 0 0% 83.90% 17ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 13ms 0.39% 84.29% 17ms 0.51% AbstractOneStepIvpOdeSolver::Solve 17ms 0.51% 84.80% 17ms 0.51% daxpy_