File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3647ms, 86.18% of 4232ms total Dropped 522 nodes (cum <= 21.16ms) flat flat% sum% cum cum% 0 0% 0% 4223ms 99.79% __libc_start_call_main 0 0% 0% 4223ms 99.79% __libc_start_main_impl 0 0% 0% 4223ms 99.79% _start 0 0% 0% 4220ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4220ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4220ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4220ms 99.72% main 0 0% 0% 4178ms 98.72% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4178ms 98.72% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4178ms 98.72% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4170ms 98.53% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4157ms 98.23% AbstractDynamicLinearPdeSolver::Solve 24ms 0.57% 0.59% 2230ms 52.69% AbstractCardiacTissue::SolveCellSystems 0 0% 0.59% 1536ms 36.29% LinearSystem::Solve 0 0% 0.59% 1494ms 35.30% KSPSolve 5ms 0.12% 0.71% 1494ms 35.30% KSPSolve_Private 1ms 0.024% 0.73% 1441ms 34.05% KSPSolve_SYMMLQ 23ms 0.54% 1.28% 1256ms 29.68% AbstractCardiacCell::ComputeExceptVoltage 21ms 0.5% 1.77% 1081ms 25.54% AbstractOneStepIvpOdeSolver::InternalSolve 64ms 1.51% 3.28% 903ms 21.34% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.095% 3.38% 870ms 20.56% PCApply 1ms 0.024% 3.40% 858ms 20.27% PCApply_BJacobi_Singleblock 191ms 4.51% 7.92% 828ms 19.57% CellLuoRudy1991FromCellML::EvaluateYDerivatives 359ms 8.48% 16.40% 782ms 18.48% __GI___exp 20ms 0.47% 16.87% 776ms 18.34% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 16.87% 731ms 17.27% KSPSolve_PREONLY (partial-inline) 252ms 5.95% 22.83% 717ms 16.94% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 22.85% 681ms 16.09% MatSolve 0 0% 22.85% 681ms 16.09% PCApply_ICC 667ms 15.76% 38.61% 672ms 15.88% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 38.61% 624ms 14.74% KSP_PCApply.lto_priv.18 4ms 0.095% 38.71% 473ms 11.18% MatMult 11ms 0.26% 38.97% 462ms 10.92% MatMult_SeqAIJ (partial-inline) 448ms 10.59% 49.55% 462ms 10.92% MatMult_SeqAIJ_Inode (inline) 331ms 7.82% 57.37% 396ms 9.36% __ieee754_exp_fma 67ms 1.58% 58.96% 348ms 8.22% BidomainSolver::SetupLinearSystem 1ms 0.024% 58.98% 324ms 7.66% KSPConvergedDefault 2ms 0.047% 59.03% 310ms 7.33% KSP_PCApply (partial-inline) 1ms 0.024% 59.05% 253ms 5.98% std::pow (inline) 19ms 0.45% 59.50% 252ms 5.95% __pow 22ms 0.52% 60.02% 232ms 5.48% __ieee754_pow_fma 2ms 0.047% 60.07% 124ms 2.93% MatNullSpaceRemove 72ms 1.70% 61.77% 121ms 2.86% CellLuoRudy1991FromCellML::VerifyStateVariables 119ms 2.81% 64.58% 119ms 2.81% log_inline (inline) 25ms 0.59% 65.17% 93ms 2.20% MPI_Wtime 0 0% 65.17% 84ms 1.98% VecDuplicate 0 0% 65.17% 80ms 1.89% VecMDot 2ms 0.047% 65.22% 80ms 1.89% VecMXDot_Private 74ms 1.75% 66.97% 79ms 1.87% exp_inline (inline) 77ms 1.82% 68.79% 77ms 1.82% ddot_ 39ms 0.92% 69.71% 76ms 1.80% TimeStepper::TimeStepper 12ms 0.28% 69.99% 69ms 1.63% PetscLogEventEndDefault 1ms 0.024% 70.01% 68ms 1.61% __GI___clock_gettime 67ms 1.58% 71.60% 67ms 1.58% [[vdso]] 2ms 0.047% 71.64% 62ms 1.47% VecDot 7ms 0.17% 71.81% 58ms 1.37% AbstractCardiacCell::SetVoltage (partial-inline) 41ms 0.97% 72.78% 58ms 1.37% top12 (inline) 11ms 0.26% 73.04% 56ms 1.32% PetscLogEventBeginDefault 56ms 1.32% 74.36% 56ms 1.32% [libchaste_heart.so] 52ms 1.23% 75.59% 54ms 1.28% VecMDot_Seq 5ms 0.12% 75.71% 52ms 1.23% VecCopy 1ms 0.024% 75.73% 52ms 1.23% VecDestroy 0 0% 75.73% 52ms 1.23% VecDot_Seq 1ms 0.024% 75.76% 52ms 1.23% VecXDot_Seq_Private.constprop.0 0 0% 75.76% 51ms 1.21% VecDuplicate_MPI 1ms 0.024% 75.78% 47ms 1.11% VecNorm 2ms 0.047% 75.83% 44ms 1.04% VecAXPY 39ms 0.92% 76.75% 43ms 1.02% AbstractParameterisedSystem::SetAnyVariable 0 0% 76.75% 42ms 0.99% VecMAXPY 41ms 0.97% 77.72% 41ms 0.97% asuint64 (inline) 0 0% 77.72% 40ms 0.95% VecNorm_Seq 39ms 0.92% 78.64% 39ms 0.92% TimeStepper::CalculateNextTime 34ms 0.8% 79.44% 38ms 0.9% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 79.44% 38ms 0.9% CxxTest::RealWorldDescription::setUp 0 0% 79.44% 38ms 0.9% PetscSetup::setUpWorld 0 0% 79.44% 38ms 0.9% PetscSetupUtils::CommonSetup 3ms 0.071% 79.51% 38ms 0.9% VecCreate 0 0% 79.51% 37ms 0.87% PetscInitialize 0 0% 79.51% 37ms 0.87% PetscSetupUtils::InitialisePetsc 0 0% 79.51% 36ms 0.85% PMPI_Init_thread 36ms 0.85% 80.36% 36ms 0.85% __memcpy_avx_unaligned_erms 0 0% 80.36% 36ms 0.85% ompi_mpi_init 12ms 0.28% 80.65% 35ms 0.83% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 6ms 0.14% 80.79% 35ms 0.83% PetscMallocA 24ms 0.57% 81.36% 34ms 0.8% AbstractOneStepIvpOdeSolver::Solve 22ms 0.52% 81.88% 33ms 0.78% TimeStepper::AdvanceOneTimeStep 0 0% 81.88% 33ms 0.78% VecDuplicate_Seq 1ms 0.024% 81.90% 32ms 0.76% AbstractBidomainSolver::FinaliseLinearSystem 8ms 0.19% 82.09% 30ms 0.71% AbstractBidomainSolver::CheckCompatibilityCondition 30ms 0.71% 82.80% 30ms 0.71% DistributedVector::Stripe::operator[] (inline) 30ms 0.71% 83.51% 30ms 0.71% VecMAXPY_Seq 30ms 0.71% 84.22% 30ms 0.71% __ieee754_log_fma 1ms 0.024% 84.24% 29ms 0.69% 4ms 0.095% 84.33% 29ms 0.69% PetscMallocAlign 0 0% 84.33% 29ms 0.69% VecAXPY_Seq 29ms 0.69% 85.02% 29ms 0.69% [libm.so.6] 29ms 0.69% 85.70% 29ms 0.69% daxpy_ 0 0% 85.70% 28ms 0.66% PetscMemcpy (inline) 5ms 0.12% 85.82% 26ms 0.61% VecCreate_MPI_Private 0 0% 85.82% 25ms 0.59% VecNorm_MPI 1ms 0.024% 85.85% 25ms 0.59% VecNorm_MPI_Default.constprop.0 0 0% 85.85% 24ms 0.57% VecCopy_Seq (partial-inline) 0 0% 85.85% 23ms 0.54% orte_init 14ms 0.33% 86.18% 22ms 0.52% AbstractParameterisedSystem::GetAnyVariable