File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 4420ms, 89.64% of 4931ms total Dropped 434 nodes (cum <= 24.66ms) flat flat% sum% cum cum% 0 0% 0% 4922ms 99.82% __libc_start_call_main 0 0% 0% 4922ms 99.82% __libc_start_main_impl 0 0% 0% 4922ms 99.82% _start 0 0% 0% 4920ms 99.78% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4920ms 99.78% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4920ms 99.78% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4920ms 99.78% main 0 0% 0% 4886ms 99.09% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4886ms 99.09% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4886ms 99.09% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4878ms 98.93% AbstractCardiacProblem::Solve 1ms 0.02% 0.02% 4870ms 98.76% AbstractDynamicLinearPdeSolver::Solve 7ms 0.14% 0.16% 2252ms 45.67% AbstractCardiacTissue::SolveCellSystems 0 0% 0.16% 2150ms 43.60% LinearSystem::Solve 0 0% 0.16% 2105ms 42.69% KSPSolve 2ms 0.041% 0.2% 2105ms 42.69% KSPSolve_Private 2ms 0.041% 0.24% 2063ms 41.84% KSPSolve_SYMMLQ 22ms 0.45% 0.69% 1329ms 26.95% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.61% 1.30% 1181ms 23.95% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.081% 1.38% 1179ms 23.91% MatMult 109ms 2.21% 3.59% 1171ms 23.75% MatMult_SeqAIJ (partial-inline) 1058ms 21.46% 25.05% 1067ms 21.64% MatMult_SeqAIJ_Inode (inline) 98ms 1.99% 27.03% 990ms 20.08% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.02% 27.05% 971ms 19.69% PCApply 1ms 0.02% 27.07% 966ms 19.59% PCApply_BJacobi_Singleblock 314ms 6.37% 33.44% 879ms 17.83% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1ms 0.02% 33.46% 834ms 16.91% KSPSolve_PREONLY (partial-inline) 1ms 0.02% 33.48% 791ms 16.04% PCApply_ICC 4ms 0.081% 33.56% 790ms 16.02% MatSolve 779ms 15.80% 49.36% 781ms 15.84% MatSolve_SeqSBAIJ_1_NaturalOrdering 31ms 0.63% 49.99% 743ms 15.07% AbstractCardiacTissue::UpdateCaches (inline) 340ms 6.90% 56.89% 690ms 13.99% CellLuoRudy1991FromCellML::GetIIonic 0 0% 56.89% 677ms 13.73% KSP_PCApply.lto_priv.18 235ms 4.77% 61.65% 650ms 13.18% __GI___exp 41ms 0.83% 62.48% 437ms 8.86% BidomainSolver::SetupLinearSystem 0 0% 62.48% 369ms 7.48% KSPConvergedDefault 0 0% 62.48% 354ms 7.18% KSP_PCApply (partial-inline) 314ms 6.37% 68.85% 314ms 6.37% __ieee754_exp_fma 2ms 0.041% 68.89% 166ms 3.37% std::pow (inline) 14ms 0.28% 69.17% 161ms 3.27% __pow 11ms 0.22% 69.40% 146ms 2.96% __ieee754_pow_fma 96ms 1.95% 71.34% 135ms 2.74% CellLuoRudy1991FromCellML::VerifyStateVariables 122ms 2.47% 73.82% 122ms 2.47% [libchaste_heart.so] 1ms 0.02% 73.84% 114ms 2.31% MatNullSpaceRemove 104ms 2.11% 75.95% 104ms 2.11% [libm.so.6] 89ms 1.80% 77.75% 89ms 1.80% ddot_ 0 0% 77.75% 86ms 1.74% VecDuplicate 26ms 0.53% 78.28% 85ms 1.72% TimeStepper::TimeStepper 80ms 1.62% 79.90% 80ms 1.62% log_inline (inline) 73ms 1.48% 81.38% 73ms 1.48% TimeStepper::CalculateNextTime 0 0% 81.38% 66ms 1.34% VecMDot 5ms 0.1% 81.48% 66ms 1.34% VecMXDot_Private 26ms 0.53% 82.01% 65ms 1.32% MPI_Wtime 1ms 0.02% 82.03% 60ms 1.22% VecNorm 0 0% 82.03% 58ms 1.18% VecNorm_Seq 52ms 1.05% 83.09% 55ms 1.12% exp_inline (inline) 0 0% 83.09% 54ms 1.10% VecDot 2ms 0.041% 83.13% 50ms 1.01% VecDuplicate_MPI 49ms 0.99% 84.12% 50ms 1.01% VecMDot_Seq 0 0% 84.12% 49ms 0.99% VecDot_Seq 1ms 0.02% 84.14% 49ms 0.99% VecXDot_Seq_Private.constprop.0 11ms 0.22% 84.36% 47ms 0.95% PetscLogEventBeginDefault 1ms 0.02% 84.38% 47ms 0.95% VecMAXPY 5ms 0.1% 84.49% 46ms 0.93% PetscMallocA 3ms 0.061% 84.55% 46ms 0.93% VecCopy 6ms 0.12% 84.67% 45ms 0.91% PetscLogEventEndDefault 2ms 0.041% 84.71% 41ms 0.83% PetscMallocAlign 1ms 0.02% 84.73% 40ms 0.81% VecDestroy 19ms 0.39% 85.11% 39ms 0.79% AbstractOneStepIvpOdeSolver::Solve 39ms 0.79% 85.91% 39ms 0.79% [[vdso]] 38ms 0.77% 86.68% 38ms 0.77% [libchaste_ode.so] 0 0% 86.68% 37ms 0.75% __GI___clock_gettime 0 0% 86.68% 36ms 0.73% VecAXPY 0 0% 86.68% 36ms 0.73% VecDuplicate_Seq 10ms 0.2% 86.88% 35ms 0.71% TimeStepper::AdvanceOneTimeStep 0 0% 86.88% 35ms 0.71% VecCreate 5ms 0.1% 86.98% 34ms 0.69% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 86.98% 34ms 0.69% VecNorm_MPI 0 0% 86.98% 34ms 0.69% VecNorm_MPI_Default.constprop.0 30ms 0.61% 87.59% 33ms 0.67% VecMAXPY_Seq 0 0% 87.59% 31ms 0.63% CxxTest::RealWorldDescription::setUp 0 0% 87.59% 31ms 0.63% PetscInitialize 0 0% 87.59% 31ms 0.63% PetscSetup::setUpWorld 0 0% 87.59% 31ms 0.63% PetscSetupUtils::CommonSetup 0 0% 87.59% 31ms 0.63% PetscSetupUtils::InitialisePetsc 31ms 0.63% 88.22% 31ms 0.63% __memcpy_evex_unaligned_erms 0 0% 88.22% 30ms 0.61% PMPI_Init_thread 0 0% 88.22% 30ms 0.61% ompi_mpi_init 10ms 0.2% 88.42% 29ms 0.59% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 29ms 0.59% 89.01% 29ms 0.59% __ieee754_log_fma 2ms 0.041% 89.05% 29ms 0.59% __posix_memalign 1ms 0.02% 89.07% 28ms 0.57% VecCreate_MPI_Private 0 0% 89.07% 27ms 0.55% VecAXPY_Seq 26ms 0.53% 89.60% 26ms 0.53% daxpy_ 2ms 0.041% 89.64% 25ms 0.51% 0 0% 89.64% 25ms 0.51% PetscMemcpy (inline)