File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 349ms, 90.41% of 386ms total Dropped 133 nodes (cum <= 1.93ms) flat flat% sum% cum cum% 0 0% 0% 378ms 97.93% __libc_start_call_main 0 0% 0% 378ms 97.93% __libc_start_main_impl 0 0% 0% 378ms 97.93% _start 0 0% 0% 375ms 97.15% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 375ms 97.15% CxxTest::TestRunner::runAllTests 0 0% 0% 375ms 97.15% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 375ms 97.15% main 0 0% 0% 343ms 88.86% CxxTest::RealTestDescription::run 0 0% 0% 343ms 88.86% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 343ms 88.86% CxxTest::TestRunner::runTest (inline) 0 0% 0% 343ms 88.86% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 343ms 88.86% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 340ms 88.08% AbstractCardiacProblem::Solve 0 0% 0% 338ms 87.56% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 302ms 78.24% LinearSystem::Solve 0 0% 0% 300ms 77.72% KSPSolve 0 0% 0% 300ms 77.72% KSPSolve_CG 2ms 0.52% 0.52% 300ms 77.72% KSPSolve_Private 0 0% 0.52% 186ms 48.19% KSP_PCApply.lto_priv.7 0 0% 0.52% 177ms 45.85% PCApply 0 0% 0.52% 177ms 45.85% PCApply_BJacobi_Singleblock 0 0% 0.52% 149ms 38.60% KSPSolve_PREONLY (partial-inline) 0 0% 0.52% 135ms 34.97% MatSolve 135ms 34.97% 35.49% 135ms 34.97% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 35.49% 135ms 34.97% PCApply_ICC 0 0% 35.49% 58ms 15.03% MatMult 2ms 0.52% 36.01% 58ms 15.03% MatMult_SeqAIJ (partial-inline) 54ms 13.99% 50.00% 58ms 15.03% MatMult_SeqAIJ_Inode (inline) 0 0% 50.00% 33ms 8.55% MatNullSpaceRemove 33ms 8.55% 58.55% 33ms 8.55% ddot_ 0 0% 58.55% 30ms 7.77% AbstractCardiacTissue::SolveCellSystems 0 0% 58.55% 29ms 7.51% CxxTest::RealWorldDescription::setUp 0 0% 58.55% 29ms 7.51% PetscInitialize 0 0% 58.55% 29ms 7.51% PetscSetup::setUpWorld 0 0% 58.55% 29ms 7.51% PetscSetupUtils::CommonSetup 0 0% 58.55% 29ms 7.51% PetscSetupUtils::InitialisePetsc 0 0% 58.55% 28ms 7.25% PMPI_Init_thread 0 0% 58.55% 28ms 7.25% ompi_mpi_init 0 0% 58.55% 24ms 6.22% AbstractCardiacCell::ComputeExceptVoltage 0 0% 58.55% 24ms 6.22% VecTDot 0 0% 58.55% 24ms 6.22% VecTDot_Seq 1ms 0.26% 58.81% 24ms 6.22% VecXDot_Seq_Private.constprop.0 1ms 0.26% 59.07% 23ms 5.96% 0 0% 59.07% 22ms 5.70% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 59.07% 21ms 5.44% VecMDot 20ms 5.18% 64.25% 21ms 5.44% VecMDot_Seq 0 0% 64.25% 21ms 5.44% VecMXDot_Private 0 0% 64.25% 20ms 5.18% orte_init 4ms 1.04% 65.28% 19ms 4.92% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 65.28% 19ms 4.92% EulerIvpOdeSolver::CalculateNextYValue 0 0% 65.28% 16ms 4.15% KSP_PCApply (partial-inline) 6ms 1.55% 66.84% 15ms 3.89% __GI___exp 0 0% 66.84% 13ms 3.37% VecAYPX 13ms 3.37% 70.21% 13ms 3.37% VecAYPX_Seq 0 0% 70.21% 13ms 3.37% hwloc_topology_load 0 0% 70.21% 12ms 3.11% VecMAXPY 12ms 3.11% 73.32% 12ms 3.11% VecMAXPY_Seq 0 0% 73.32% 12ms 3.11% VecNorm 0 0% 73.32% 12ms 3.11% __GI__dl_catch_exception 0 0% 73.32% 12ms 3.11% _dl_catch_error 0 0% 73.32% 12ms 3.11% _dlerror_run 0 0% 73.32% 12ms 3.11% hwloc_linux_get_tid_last_cpu_location 0 0% 73.32% 12ms 3.11% mca_base_framework_open 0 0% 73.32% 12ms 3.11% mca_base_framework_register 0 0% 73.32% 11ms 2.85% VecNorm_Seq 0 0% 73.32% 11ms 2.85% mca_base_framework_components_register 0 0% 73.32% 11ms 2.85% opal_stackframe_output 0 0% 73.32% 10ms 2.59% VecDuplicate 0 0% 73.32% 10ms 2.59% ___dlopen 0 0% 73.32% 10ms 2.59% _dl_open 0 0% 73.32% 10ms 2.59% dl_open_worker 0 0% 73.32% 10ms 2.59% dlopen_doit 0 0% 73.32% 10ms 2.59% dlopen_implementation (inline) 0 0% 73.32% 9ms 2.33% VecDuplicate_Seq 9ms 2.33% 75.65% 9ms 2.33% __ieee754_exp_fma 0 0% 75.65% 9ms 2.33% dl_open_worker_begin 0 0% 75.65% 9ms 2.33% mca_base_component_find 0 0% 75.65% 9ms 2.33% mca_base_component_repository_open 0 0% 75.65% 8ms 2.07% _dl_init 0 0% 75.65% 8ms 2.07% call_init (inline) 0 0% 75.65% 7ms 1.81% VecSetType (partial-inline) 0 0% 75.65% 7ms 1.81% _dl_lookup_symbol_x 0 0% 75.65% 7ms 1.81% _dl_start_user 0 0% 75.65% 6ms 1.55% VecAXPY 0 0% 75.65% 6ms 1.55% VecAXPY_Seq 6ms 1.55% 77.20% 6ms 1.55% __strcmp_evex 6ms 1.55% 78.76% 6ms 1.55% daxpy_ 5ms 1.30% 80.05% 6ms 1.55% do_lookup_x 0 0% 80.05% 6ms 1.55% opal_hwloc_base_get_topology 0 0% 80.05% 6ms 1.55% orte_ess_base_proc_binding 5ms 1.30% 81.35% 5ms 1.30% __GI___libc_read 0 0% 81.35% 5ms 1.30% _dl_open_relocate_one_object (inline) 0 0% 81.35% 5ms 1.30% _dl_relocate_object 0 0% 81.35% 5ms 1.30% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 81.35% 5ms 1.30% boost::serialization::singleton::get_instance 1ms 0.26% 81.61% 5ms 1.30% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 81.61% 5ms 1.30% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 81.61% 5ms 1.30% elf_dynamic_do_Rela (inline) 0 0% 81.61% 4ms 1.04% BidomainSolver::SetupLinearSystem 1ms 0.26% 81.87% 4ms 1.04% PetscMallocA 1ms 0.26% 82.12% 4ms 1.04% VecCreate_Seq 0 0% 82.12% 4ms 1.04% _dl_map_object 0 0% 82.12% 4ms 1.04% elf_machine_rela (inline) 0 0% 82.12% 4ms 1.04% resolve_map (inline) 0 0% 82.12% 3ms 0.78% AbstractCardiacProblem::Initialise 0 0% 82.12% 3ms 0.78% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 82.12% 3ms 0.78% CellLuoRudy1991FromCellML::GetIIonic 0 0% 82.12% 3ms 0.78% CxxTest::RealWorldDescription::tearDown 0 0% 82.12% 3ms 0.78% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 82.12% 3ms 0.78% KSPConvergedReasonViewFromOptions 0 0% 82.12% 3ms 0.78% PetscFinalize 0 0% 82.12% 3ms 0.78% PetscMallocAlign 1ms 0.26% 82.38% 3ms 0.78% PetscOptionsFindPair 0 0% 82.38% 3ms 0.78% PetscOptionsGetViewer 0 0% 82.38% 3ms 0.78% PetscSetup::tearDownWorld 0 0% 82.38% 3ms 0.78% PetscSetupUtils::CommonFinalize 0 0% 82.38% 3ms 0.78% VecDestroy 0 0% 82.38% 3ms 0.78% __GI___libc_free 0 0% 82.38% 3ms 0.78% __GI_exit 0 0% 82.38% 3ms 0.78% __cxa_finalize 1ms 0.26% 82.64% 3ms 0.78% __posix_memalign 0 0% 82.64% 3ms 0.78% __run_exit_handlers 0 0% 82.64% 3ms 0.78% _dl_call_fini 0 0% 82.64% 3ms 0.78% _dl_fini 0 0% 82.64% 3ms 0.78% _dl_fixup 0 0% 82.64% 3ms 0.78% _dl_map_object_from_fd 0 0% 82.64% 3ms 0.78% _dl_runtime_resolve_xsavec 2ms 0.52% 83.16% 3ms 0.78% _int_free 0 0% 83.16% 3ms 0.78% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 83.16% 3ms 0.78% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 83.16% 3ms 0.78% boost::serialization::void_cast_detail::void_caster::recursive_unregister 0 0% 83.16% 3ms 0.78% boost::serialization::void_cast_detail::void_caster_primitive::~void_caster_primitive (inline) 0 0% 83.16% 3ms 0.78% ompi_mpi_finalize 3ms 0.78% 83.94% 3ms 0.78% std::_Rb_tree_increment 0 0% 83.94% 2ms 0.52% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 83.94% 2ms 0.52% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 83.94% 2ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 83.94% 2ms 0.52% BidomainAssembler::ComputeMatrixTerm 0 0% 83.94% 2ms 0.52% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 83.94% 2ms 0.52% KSPConvergedDefault 0 0% 83.94% 2ms 0.52% PetscFreeAlign 1ms 0.26% 84.20% 2ms 0.52% PetscFunctionListAdd_Private 2ms 0.52% 84.72% 2ms 0.52% PetscOptHash (inline) 0 0% 84.72% 2ms 0.52% PetscStrcmp (inline) 2ms 0.52% 85.23% 2ms 0.52% ReplicatableVector::operator[] 0 0% 85.23% 2ms 0.52% TrianglesMeshReader::GetNextItemFromStream 0 0% 85.23% 2ms 0.52% VecCreate 1ms 0.26% 85.49% 2ms 0.52% VecCreate_Seq_Private 0 0% 85.49% 2ms 0.52% VecDestroy_Seq 0 0% 85.49% 2ms 0.52% [hwloc_pci.so] 2ms 0.52% 86.01% 2ms 0.52% [libchaste_heart.so] 0 0% 86.01% 2ms 0.52% [libpciaccess.so.0.11.1] 0 0% 86.01% 2ms 0.52% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.01% 2ms 0.52% __GI___libc_malloc 2ms 0.52% 86.53% 2ms 0.52% __GI___readdir64 2ms 0.52% 87.05% 2ms 0.52% __GI_munmap 0 0% 87.05% 2ms 0.52% __dlclose 0 0% 87.05% 2ms 0.52% __ieee754_pow_fma 2ms 0.52% 87.56% 2ms 0.52% __libc_openat64 2ms 0.52% 88.08% 2ms 0.52% __mmap64 0 0% 88.08% 2ms 0.52% __pow 0 0% 88.08% 2ms 0.52% _dl_close 0 0% 88.08% 2ms 0.52% _dl_close_worker (inline) 0 0% 88.08% 2ms 0.52% _dl_map_segments (inline) 0 0% 88.08% 2ms 0.52% _dl_unmap 0 0% 88.08% 2ms 0.52% _dl_unmap_segments (inline) 1ms 0.26% 88.34% 2ms 0.52% _int_malloc 2ms 0.52% 88.86% 2ms 0.52% _mm_prefetch (inline) 1ms 0.26% 89.12% 2ms 0.52% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.12% 2ms 0.52% boost::numeric::ublas::matrix_assign (inline) 0 0% 89.12% 2ms 0.52% boost::numeric::ublas::matrix_slice::operator= (inline) 0 0% 89.12% 2ms 0.52% hwloc_topology_set_userdata_import_callback 0 0% 89.12% 2ms 0.52% kh_get_HO (inline) 2ms 0.52% 89.64% 2ms 0.52% log_inline (inline) 0 0% 89.64% 2ms 0.52% mca_base_component_repository_release 0 0% 89.64% 2ms 0.52% mca_base_components_close 0 0% 89.64% 2ms 0.52% mca_base_framework_close 0 0% 89.64% 2ms 0.52% mca_base_framework_components_open 0 0% 89.64% 2ms 0.52% mca_base_pvar_find 0 0% 89.64% 2ms 0.52% mca_topo_base_dist_graph_neighbors_count 1ms 0.26% 89.90% 2ms 0.52% opal_hash_table_get_value_ptr 0 0% 89.90% 2ms 0.52% opal_hwloc_base_membind 0 0% 89.90% 2ms 0.52% pci_get_strings 1ms 0.26% 90.16% 2ms 0.52% std::__cxx11::basic_string::basic_string 0 0% 90.16% 2ms 0.52% std::__cxx11::basic_stringstream::basic_stringstream 0 0% 90.16% 2ms 0.52% std::basic_ios::init 1ms 0.26% 90.41% 2ms 0.52% std::ios_base::_M_init 0 0% 90.41% 2ms 0.52% std::pow (inline)