File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3702ms, 86.94% of 4258ms total Dropped 511 nodes (cum <= 21.29ms) flat flat% sum% cum cum% 0 0% 0% 4249ms 99.79% __libc_start_call_main 0 0% 0% 4249ms 99.79% __libc_start_main_impl 0 0% 0% 4249ms 99.79% _start 0 0% 0% 4246ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4246ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4246ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4246ms 99.72% main 0 0% 0% 4200ms 98.64% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4200ms 98.64% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4200ms 98.64% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 2ms 0.047% 0.047% 4191ms 98.43% AbstractCardiacProblem::Solve 0 0% 0.047% 4182ms 98.22% AbstractDynamicLinearPdeSolver::Solve 19ms 0.45% 0.49% 1979ms 46.48% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.52% 1618ms 38.00% LinearSystem::Solve 0 0% 0.52% 1534ms 36.03% KSPSolve 4ms 0.094% 0.61% 1534ms 36.03% KSPSolve_Private 2ms 0.047% 0.66% 1467ms 34.45% KSPSolve_CG 49ms 1.15% 1.81% 1361ms 31.96% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 278ms 6.53% 8.34% 1207ms 28.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 4ms 0.094% 8.43% 854ms 20.06% PCApply 0 0% 8.43% 845ms 19.84% PCApply_BJacobi_Singleblock 0 0% 8.43% 704ms 16.53% KSPSolve_PREONLY (partial-inline) 12ms 0.28% 8.71% 671ms 15.76% MatMult 4ms 0.094% 8.81% 665ms 15.62% MatSolve 0 0% 8.81% 665ms 15.62% PCApply_ICC 650ms 15.27% 24.07% 656ms 15.41% MatSolve_SeqSBAIJ_1_NaturalOrdering 18ms 0.42% 24.50% 647ms 15.19% MatMult_SeqAIJ (partial-inline) 628ms 14.75% 39.24% 647ms 15.19% MatMult_SeqAIJ_Inode (inline) 0 0% 39.24% 641ms 15.05% KSP_PCApply.lto_priv.7 16ms 0.38% 39.62% 539ms 12.66% AbstractCardiacTissue::UpdateCaches (inline) 79ms 1.86% 41.47% 528ms 12.40% CardiacNewtonSolver::Solve 130ms 3.05% 44.53% 499ms 11.72% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 96ms 2.25% 46.78% 497ms 11.67% BidomainSolver::SetupLinearSystem 67ms 1.57% 48.36% 315ms 7.40% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 167ms 3.92% 52.28% 291ms 6.83% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2ms 0.047% 52.33% 269ms 6.32% KSPConvergedDefault 0 0% 52.33% 263ms 6.18% KSP_PCApply (partial-inline) 26ms 0.61% 52.94% 243ms 5.71% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 233ms 5.47% 58.41% 233ms 5.47% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 58.41% 210ms 4.93% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 49ms 1.15% 59.56% 210ms 4.93% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 2ms 0.047% 59.61% 162ms 3.80% std::pow (inline) 29ms 0.68% 60.29% 159ms 3.73% __pow 0 0% 60.29% 147ms 3.45% boost::numeric::ublas::norm_inf (inline) 97ms 2.28% 62.56% 147ms 3.45% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 62.56% 147ms 3.45% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 62.56% 147ms 3.45% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 135ms 3.17% 65.74% 139ms 3.26% __ieee754_log_fma 50ms 1.17% 66.91% 131ms 3.08% __GI___exp 17ms 0.4% 67.31% 129ms 3.03% __ieee754_pow_fma 1ms 0.023% 67.33% 117ms 2.75% MatNullSpaceRemove 1ms 0.023% 67.36% 109ms 2.56% VecDuplicate 69ms 1.62% 68.98% 102ms 2.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 96ms 2.25% 71.23% 96ms 2.25% ddot_ 19ms 0.45% 71.68% 85ms 2.00% MPI_Wtime 2ms 0.047% 71.72% 80ms 1.88% AbstractBidomainSolver::FinaliseLinearSystem 28ms 0.66% 72.38% 77ms 1.81% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.047% 72.43% 74ms 1.74% VecDuplicate_MPI 0 0% 72.43% 74ms 1.74% VecMDot 6ms 0.14% 72.57% 74ms 1.74% VecMXDot_Private 1ms 0.023% 72.59% 74ms 1.74% VecTDot 70ms 1.64% 74.24% 72ms 1.69% exp_inline (inline) 0 0% 74.24% 67ms 1.57% VecTDot_Seq 1ms 0.023% 74.26% 67ms 1.57% VecXDot_Seq_Private.constprop.0 65ms 1.53% 75.79% 65ms 1.53% [[vdso]] 0 0% 75.79% 65ms 1.53% __GI___clock_gettime 12ms 0.28% 76.07% 64ms 1.50% PetscLogEventBeginDefault 4ms 0.094% 76.16% 57ms 1.34% VecNorm 13ms 0.31% 76.47% 54ms 1.27% PetscLogEventEndDefault 3ms 0.07% 76.54% 53ms 1.24% VecCreate 51ms 1.20% 77.74% 51ms 1.20% [libchaste_heart.so] 2ms 0.047% 77.78% 48ms 1.13% VecNorm_Seq 0 0% 77.78% 48ms 1.13% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 77.78% 48ms 1.13% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 77.78% 48ms 1.13% boost_numeric_ublas_abs (inline) 48ms 1.13% 78.91% 48ms 1.13% std::abs (inline) 45ms 1.06% 79.97% 47ms 1.10% VecMDot_Seq 40ms 0.94% 80.91% 46ms 1.08% __ieee754_exp_fma 5ms 0.12% 81.02% 45ms 1.06% PetscMallocA 2ms 0.047% 81.07% 42ms 0.99% PetscTimeSubtract (inline) 9ms 0.21% 81.28% 42ms 0.99% VecMAXPY 0 0% 81.28% 41ms 0.96% CxxTest::RealWorldDescription::setUp 0 0% 81.28% 41ms 0.96% PMPI_Init_thread 0 0% 81.28% 41ms 0.96% PetscInitialize 0 0% 81.28% 41ms 0.96% PetscSetup::setUpWorld 0 0% 81.28% 41ms 0.96% PetscSetupUtils::CommonSetup 0 0% 81.28% 41ms 0.96% PetscSetupUtils::InitialisePetsc 6ms 0.14% 81.42% 41ms 0.96% VecCopy 0 0% 81.42% 41ms 0.96% ompi_mpi_init 3ms 0.07% 81.49% 40ms 0.94% PetscMallocAlign 39ms 0.92% 82.41% 39ms 0.92% [libm.so.6] 39ms 0.92% 83.33% 39ms 0.92% log_inline (inline) 38ms 0.89% 84.22% 38ms 0.89% DistributedVector::Iterator::operator!= 1ms 0.023% 84.24% 36ms 0.85% 1ms 0.023% 84.26% 34ms 0.8% VecDuplicate_Seq 32ms 0.75% 85.02% 32ms 0.75% DistributedVector::Stripe::operator[] (inline) 1ms 0.023% 85.04% 30ms 0.7% VecCreate_MPI_Private 0 0% 85.04% 26ms 0.61% VecNorm_MPI 0 0% 85.04% 26ms 0.61% VecNorm_MPI_Default.constprop.0 15ms 0.35% 85.39% 25ms 0.59% AbstractCardiacCell::SetVoltage 5ms 0.12% 85.51% 25ms 0.59% PetscHeaderCreate_Private 1ms 0.023% 85.53% 25ms 0.59% VecDestroy 4ms 0.094% 85.63% 25ms 0.59% __posix_memalign 21ms 0.49% 86.12% 24ms 0.56% VecMAXPY_Seq 12ms 0.28% 86.40% 24ms 0.56% __GI___libc_malloc 1ms 0.023% 86.43% 23ms 0.54% VecStashCreate_Private 0 0% 86.43% 23ms 0.54% orte_init 22ms 0.52% 86.94% 22ms 0.52% DistributedVector::End