File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3651ms, 86.17% of 4237ms total Dropped 501 nodes (cum <= 21.18ms) flat flat% sum% cum cum% 0 0% 0% 4229ms 99.81% __libc_start_call_main 0 0% 0% 4229ms 99.81% __libc_start_main_impl 0 0% 0% 4229ms 99.81% _start 0 0% 0% 4225ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4225ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4225ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4225ms 99.72% main 0 0% 0% 4186ms 98.80% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4186ms 98.80% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4186ms 98.80% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4177ms 98.58% AbstractCardiacProblem::Solve 2ms 0.047% 0.094% 4163ms 98.25% AbstractDynamicLinearPdeSolver::Solve 22ms 0.52% 0.61% 2239ms 52.84% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.64% 1557ms 36.75% LinearSystem::Solve 1ms 0.024% 0.66% 1508ms 35.59% KSPSolve 3ms 0.071% 0.73% 1507ms 35.57% KSPSolve_Private 3ms 0.071% 0.8% 1468ms 34.65% KSPSolve_SYMMLQ 22ms 0.52% 1.32% 1263ms 29.81% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.54% 1.86% 1084ms 25.58% AbstractOneStepIvpOdeSolver::InternalSolve 54ms 1.27% 3.14% 912ms 21.52% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.024% 3.16% 900ms 21.24% PCApply 0 0% 3.16% 892ms 21.05% PCApply_BJacobi_Singleblock 243ms 5.74% 8.90% 844ms 19.92% CellLuoRudy1991FromCellML::EvaluateYDerivatives 25ms 0.59% 9.49% 801ms 18.90% AbstractCardiacTissue::UpdateCaches (inline) 370ms 8.73% 18.22% 758ms 17.89% __GI___exp 0 0% 18.22% 748ms 17.65% KSPSolve_PREONLY (partial-inline) 263ms 6.21% 24.43% 741ms 17.49% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 24.45% 704ms 16.62% PCApply_ICC 3ms 0.071% 24.52% 703ms 16.59% MatSolve 688ms 16.24% 40.76% 693ms 16.36% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.76% 645ms 15.22% KSP_PCApply.lto_priv.18 1ms 0.024% 40.78% 449ms 10.60% MatMult 41ms 0.97% 41.75% 437ms 10.31% MatMult_SeqAIJ (partial-inline) 394ms 9.30% 51.05% 406ms 9.58% MatMult_SeqAIJ_Inode (inline) 322ms 7.60% 58.65% 368ms 8.69% __ieee754_exp_fma 1ms 0.024% 58.67% 328ms 7.74% KSPConvergedDefault 0 0% 58.67% 317ms 7.48% KSP_PCApply (partial-inline) 80ms 1.89% 60.56% 305ms 7.20% BidomainSolver::SetupLinearSystem 2ms 0.047% 60.61% 248ms 5.85% std::pow (inline) 20ms 0.47% 61.08% 246ms 5.81% __pow 22ms 0.52% 61.60% 226ms 5.33% __ieee754_pow_fma 125ms 2.95% 64.55% 125ms 2.95% log_inline (inline) 1ms 0.024% 64.57% 116ms 2.74% MatNullSpaceRemove 59ms 1.39% 65.97% 112ms 2.64% CellLuoRudy1991FromCellML::VerifyStateVariables 22ms 0.52% 66.49% 95ms 2.24% MPI_Wtime 1ms 0.024% 66.51% 85ms 2.01% VecDuplicate 16ms 0.38% 66.89% 79ms 1.86% PetscLogEventEndDefault 32ms 0.76% 67.64% 76ms 1.79% TimeStepper::TimeStepper 0 0% 67.64% 76ms 1.79% VecMDot 6ms 0.14% 67.78% 76ms 1.79% VecMXDot_Private 72ms 1.70% 69.48% 72ms 1.70% [[vdso]] 0 0% 69.48% 72ms 1.70% __GI___clock_gettime 70ms 1.65% 71.14% 70ms 1.65% ddot_ 65ms 1.53% 72.67% 67ms 1.58% exp_inline (inline) 14ms 0.33% 73.00% 66ms 1.56% PetscLogEventBeginDefault 1ms 0.024% 73.02% 55ms 1.30% VecAXPY 2ms 0.047% 73.07% 54ms 1.27% VecCopy 10ms 0.24% 73.31% 53ms 1.25% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 73.31% 53ms 1.25% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 73.31% 50ms 1.18% VecDot 0 0% 73.31% 49ms 1.16% VecNorm 33ms 0.78% 74.09% 47ms 1.11% AbstractOneStepIvpOdeSolver::Solve 1ms 0.024% 74.11% 47ms 1.11% VecDestroy 1ms 0.024% 74.13% 47ms 1.11% VecDuplicate_MPI 46ms 1.09% 75.22% 46ms 1.09% TimeStepper::CalculateNextTime 46ms 1.09% 76.30% 46ms 1.09% __memcpy_avx_unaligned_erms 38ms 0.9% 77.20% 46ms 1.09% top12 (inline) 1ms 0.024% 77.22% 44ms 1.04% VecNorm_Seq 42ms 0.99% 78.22% 43ms 1.01% VecMDot_Seq 0 0% 78.22% 42ms 0.99% VecDot_Seq 1ms 0.024% 78.24% 42ms 0.99% VecXDot_Seq_Private.constprop.0 41ms 0.97% 79.21% 41ms 0.97% [libchaste_heart.so] 0 0% 79.21% 40ms 0.94% PetscTimeSubtract (inline) 19ms 0.45% 79.66% 39ms 0.92% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 33ms 0.78% 80.43% 39ms 0.92% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.094% 80.53% 39ms 0.92% PetscMallocA 0 0% 80.53% 39ms 0.92% VecMAXPY 0 0% 80.53% 38ms 0.9% VecCreate 13ms 0.31% 80.84% 37ms 0.87% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 80.84% 37ms 0.87% VecDuplicate_Seq 36ms 0.85% 81.69% 36ms 0.85% DistributedVector::Iterator::operator!= 0 0% 81.69% 36ms 0.85% PetscMemcpy (inline) 36ms 0.85% 82.53% 36ms 0.85% __ieee754_log_fma 0 0% 82.53% 35ms 0.83% CxxTest::RealWorldDescription::setUp 0 0% 82.53% 35ms 0.83% PetscInitialize 5ms 0.12% 82.65% 35ms 0.83% PetscMallocAlign 0 0% 82.65% 35ms 0.83% PetscSetup::setUpWorld 0 0% 82.65% 35ms 0.83% PetscSetupUtils::CommonSetup 0 0% 82.65% 35ms 0.83% PetscSetupUtils::InitialisePetsc 0 0% 82.65% 34ms 0.8% PMPI_Init_thread 0 0% 82.65% 34ms 0.8% ompi_mpi_init 1ms 0.024% 82.68% 33ms 0.78% VecAXPY_Seq 32ms 0.76% 83.43% 32ms 0.76% daxpy_ 0 0% 83.43% 29ms 0.68% VecCopy_Seq (partial-inline) 0 0% 83.43% 28ms 0.66% 0 0% 83.43% 27ms 0.64% VecNorm_MPI 0 0% 83.43% 27ms 0.64% VecNorm_MPI_Default.constprop.0 25ms 0.59% 84.02% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 25ms 0.59% 84.61% 25ms 0.59% VecMAXPY_Seq 0 0% 84.61% 24ms 0.57% orte_init 11ms 0.26% 84.87% 23ms 0.54% TimeStepper::AdvanceOneTimeStep 3ms 0.071% 84.94% 23ms 0.54% VecCreate_MPI_Private 12ms 0.28% 85.23% 23ms 0.54% std::__cxx11::basic_string::basic_string 0 0% 85.23% 23ms 0.54% std::vector::_M_assign_aux (inline) 0 0% 85.23% 23ms 0.54% std::vector::assign (inline) 0 0% 85.23% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 18ms 0.42% 85.65% 22ms 0.52% AbstractParameterisedSystem::SetAnyVariable 22ms 0.52% 86.17% 22ms 0.52% asuint64 (inline)