File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 107291ms, 91.78% of 116899ms total Dropped 1125 nodes (cum <= 584.50ms) flat flat% sum% cum cum% 0 0% 0% 116886ms 100% __libc_start_call_main 0 0% 0% 116886ms 100% __libc_start_main_impl 0 0% 0% 116886ms 100% _start 0 0% 0% 116883ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 116883ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 116883ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 116883ms 100% main 0 0% 0% 116848ms 100% AbstractConvergenceTester::Converge 0 0% 0% 116848ms 100% CxxTest::RealTestDescription::run 0 0% 0% 116848ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 116848ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 116848ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 116848ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 5ms 0.0043% 0.0043% 115621ms 98.91% AbstractCardiacProblem::Solve 3ms 0.0026% 0.0068% 114890ms 98.28% AbstractDynamicLinearPdeSolver::Solve 1ms 0.00086% 0.0077% 63790ms 54.57% LinearSystem::Solve 2ms 0.0017% 0.0094% 63370ms 54.21% KSPSolve 6ms 0.0051% 0.015% 63369ms 54.21% KSPSolve_Private 6ms 0.0051% 0.02% 63074ms 53.96% KSPSolve_SYMMLQ 217ms 0.19% 0.21% 42302ms 36.19% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.21% 35758ms 30.59% PCApply 1ms 0.00086% 0.21% 35752ms 30.58% PCApply_BJacobi_Singleblock 1ms 0.00086% 0.21% 33614ms 28.75% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.21% 32450ms 27.76% PCApply_ICC 6ms 0.0051% 0.22% 32448ms 27.76% MatSolve 32012ms 27.38% 27.60% 32442ms 27.75% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1364ms 1.17% 28.77% 32420ms 27.73% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00086% 28.77% 30902ms 26.43% KSP_PCApply.lto_priv.18 6768ms 5.79% 34.56% 28066ms 24.01% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 4ms 0.0034% 34.56% 21419ms 18.32% MatMult 284ms 0.24% 34.80% 21415ms 18.32% MatMult_SeqAIJ (partial-inline) 20913ms 17.89% 52.69% 21413ms 18.32% MatMult_SeqAIJ_Inode (inline) 1989ms 1.70% 54.39% 14855ms 12.71% CardiacNewtonSolver::Solve 329ms 0.28% 54.68% 9019ms 7.72% AbstractCardiacTissue::UpdateCaches (inline) 4474ms 3.83% 58.50% 8647ms 7.40% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1927ms 1.65% 60.15% 8497ms 7.27% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1087ms 0.93% 61.08% 7702ms 6.59% BidomainSolver::SetupLinearSystem 1159ms 0.99% 62.07% 7086ms 6.06% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00086% 62.07% 6942ms 5.94% KSP_PCApply (partial-inline) 4ms 0.0034% 62.08% 6372ms 5.45% KSPConvergedDefault 5691ms 4.87% 66.95% 5691ms 4.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3877ms 3.32% 70.26% 3929ms 3.36% __ieee754_log_fma 0 0% 70.26% 3829ms 3.28% boost::numeric::ublas::norm_inf (inline) 2607ms 2.23% 72.49% 3829ms 3.28% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.49% 3829ms 3.28% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.49% 3829ms 3.28% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0077% 72.50% 3286ms 2.81% MatNullSpaceRemove 28ms 0.024% 72.52% 3182ms 2.72% std::pow (inline) 417ms 0.36% 72.88% 3150ms 2.69% __pow 3067ms 2.62% 75.50% 3067ms 2.62% __memcpy_avx_unaligned_erms 0 0% 75.50% 3029ms 2.59% PetscMemcpy (inline) 2837ms 2.43% 77.93% 2837ms 2.43% ddot_ 1661ms 1.42% 79.35% 2792ms 2.39% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 368ms 0.31% 79.67% 2725ms 2.33% __ieee754_pow_fma 21ms 0.018% 79.69% 2625ms 2.25% VecCopy 5ms 0.0043% 79.69% 2603ms 2.23% VecCopy_Seq (partial-inline) 9ms 0.0077% 79.70% 2317ms 1.98% VecDot 0 0% 79.70% 2308ms 1.97% VecDot_Seq 2ms 0.0017% 79.70% 2308ms 1.97% VecXDot_Seq_Private.constprop.0 16ms 0.014% 79.71% 2234ms 1.91% VecAXPY 8ms 0.0068% 79.72% 2218ms 1.90% VecAXPY_Seq 2192ms 1.88% 81.59% 2192ms 1.88% daxpy_ 1ms 0.00086% 81.60% 2056ms 1.76% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.60% 1844ms 1.58% VecMDot 8ms 0.0068% 81.60% 1842ms 1.58% VecMXDot_Private 1824ms 1.56% 83.16% 1831ms 1.57% VecMDot_Seq 22ms 0.019% 83.18% 1701ms 1.46% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1562ms 1.34% 84.52% 1629ms 1.39% exp_inline (inline) 6ms 0.0051% 84.52% 1433ms 1.23% VecMAXPY 1420ms 1.21% 85.74% 1427ms 1.22% VecMAXPY_Seq 1416ms 1.21% 86.95% 1416ms 1.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.95% 1411ms 1.21% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1ms 0.00086% 86.95% 1140ms 0.98% KSP_RemoveNullSpace (inline) 10ms 0.0086% 86.96% 1128ms 0.96% boost::numeric::ublas::matrix_assign (inline) 0 0% 86.96% 1124ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.96% 1124ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.96% 1124ms 0.96% boost_numeric_ublas_abs (inline) 1124ms 0.96% 87.92% 1124ms 0.96% std::abs (inline) 206ms 0.18% 88.10% 1108ms 0.95% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.10% 1086ms 0.93% CuboidMeshConstructor::Construct 0 0% 88.10% 1085ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.10% 1085ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0017% 88.10% 990ms 0.85% Element::Element 719ms 0.62% 88.71% 980ms 0.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 88.72% 961ms 0.82% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0026% 88.72% 924ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 8ms 0.0068% 88.73% 900ms 0.77% VecScale 4ms 0.0034% 88.73% 892ms 0.76% VecScale_Seq 10ms 0.0086% 88.74% 887ms 0.76% boost::numeric::ublas::c_matrix::c_matrix (inline) 885ms 0.76% 89.49% 885ms 0.76% __memset_avx2_unaligned_erms 885ms 0.76% 90.25% 885ms 0.76% dscal_ 0 0% 90.25% 880ms 0.75% PetscMemzero (inline) 4ms 0.0034% 90.25% 873ms 0.75% BidomainAssembler::ComputeMatrixTerm 847ms 0.72% 90.98% 847ms 0.72% [libchaste_heart.so] 1ms 0.00086% 90.98% 801ms 0.69% AbstractBidomainSolver::FinaliseLinearSystem 232ms 0.2% 91.18% 799ms 0.68% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.0026% 91.18% 744ms 0.64% VecDuplicate 5ms 0.0043% 91.19% 730ms 0.62% VecNorm 0 0% 91.19% 724ms 0.62% VecNorm_Seq 680ms 0.58% 91.77% 680ms 0.58% log_inline (inline) 0 0% 91.77% 675ms 0.58% BidomainProblem::WriteOneStep 0 0% 91.77% 645ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 9ms 0.0077% 91.77% 621ms 0.53% PetscMallocA 7ms 0.006% 91.78% 612ms 0.52% PetscMallocAlign (partial-inline)