File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12521ms, 85.05% of 14722ms total Dropped 724 nodes (cum <= 73.61ms) flat flat% sum% cum cum% 0 0% 0% 14716ms 100% __libc_start_call_main 0 0% 0% 14716ms 100% __libc_start_main_impl 0 0% 0% 14716ms 100% _start 0 0% 0% 14713ms 99.94% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14713ms 99.94% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14713ms 99.94% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14713ms 99.94% main 0 0% 0% 14680ms 99.71% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14680ms 99.71% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14680ms 99.71% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0068% 0.0068% 14658ms 99.57% AbstractCardiacProblem::Solve 5ms 0.034% 0.041% 11391ms 77.37% AbstractDynamicLinearPdeSolver::Solve 43ms 0.29% 0.33% 9106ms 61.85% AbstractCardiacTissue::SolveCellSystems 173ms 1.18% 1.51% 5643ms 38.33% AbstractCardiacCell::ComputeExceptVoltage 176ms 1.20% 2.70% 4861ms 33.02% AbstractOneStepIvpOdeSolver::InternalSolve 186ms 1.26% 3.97% 4120ms 27.99% EulerIvpOdeSolver::CalculateNextYValue 882ms 5.99% 9.96% 3878ms 26.34% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1765ms 11.99% 21.95% 3549ms 24.11% __GI___exp 1ms 0.0068% 21.95% 3193ms 21.69% MonodomainProblem::WriteOneStep 2ms 0.014% 21.97% 3055ms 20.75% Hdf5DataWriter::PutVector 2ms 0.014% 21.98% 3040ms 20.65% H5Dwrite 4ms 0.027% 22.01% 3015ms 20.48% H5D__write 104ms 0.71% 22.71% 2625ms 17.83% AbstractCardiacTissue::UpdateCaches (inline) 794ms 5.39% 28.11% 2465ms 16.74% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.0068% 28.11% 1831ms 12.44% H5D__chunk_collective_write 16ms 0.11% 28.22% 1830ms 12.43% H5F_set_coll_metadata_reads 1559ms 10.59% 38.81% 1710ms 11.62% __ieee754_exp_fma 20ms 0.14% 38.95% 1613ms 10.96% H5FD_s3comms_uriencode 3ms 0.02% 38.97% 1511ms 10.26% LinearSystem::Solve 0 0% 38.97% 1355ms 9.20% KSPSolve 3ms 0.02% 38.99% 1355ms 9.20% KSPSolve_Private 6ms 0.041% 39.03% 1335ms 9.07% KSPSolve_CG 4ms 0.027% 39.06% 1251ms 8.50% H5F_block_write 43ms 0.29% 39.35% 1247ms 8.47% 1ms 0.0068% 39.36% 1247ms 8.47% H5PB_write 0 0% 39.36% 1246ms 8.46% H5FD_write 0 0% 39.36% 1246ms 8.46% H5F__accum_write 3ms 0.02% 39.38% 1169ms 7.94% H5D__mpio_select_write 8ms 0.054% 39.43% 1081ms 7.34% H5D__chunk_cacheable 0 0% 39.43% 1058ms 7.19% PMPI_File_write_at_all 1033ms 7.02% 46.45% 1036ms 7.04% __GI_pwritev64 6ms 0.041% 46.49% 912ms 6.19% std::pow (inline) 83ms 0.56% 47.05% 906ms 6.15% __pow 383ms 2.60% 49.65% 897ms 6.09% H5S_select_iterate 97ms 0.66% 50.31% 822ms 5.58% __ieee754_pow_fma 324ms 2.20% 52.51% 750ms 5.09% MonodomainSolver::SetupLinearSystem 1ms 0.0068% 52.52% 714ms 4.85% PCApply 1ms 0.0068% 52.53% 711ms 4.83% PCApply_BJacobi_Singleblock 1ms 0.0068% 52.53% 673ms 4.57% KSPSolve_PREONLY 2ms 0.014% 52.55% 672ms 4.56% MatSolve 0 0% 52.55% 672ms 4.56% PCApply_ICC 659ms 4.48% 57.02% 670ms 4.55% MatSolve_SeqSBAIJ_1_NaturalOrdering 317ms 2.15% 59.18% 652ms 4.43% CellLuoRudy1991FromCellML::VerifyStateVariables 3ms 0.02% 59.20% 586ms 3.98% MatMult 583ms 3.96% 63.16% 583ms 3.96% MatMult_SeqAIJ 0 0% 63.16% 551ms 3.74% KSP_PCApply.lto_priv.7 69ms 0.47% 63.63% 522ms 3.55% H5D__chunk_set_sizes 57ms 0.39% 64.01% 451ms 3.06% H5S_mpio_space_type 402ms 2.73% 66.74% 402ms 2.73% log_inline (inline) 285ms 1.94% 68.68% 285ms 1.94% exp_inline (inline) 107ms 0.73% 69.41% 248ms 1.68% TimeStepper::TimeStepper 55ms 0.37% 69.78% 231ms 1.57% __GI___libc_malloc 0 0% 69.78% 224ms 1.52% KSPConvergedDefault 167ms 1.13% 70.91% 216ms 1.47% _int_malloc 107ms 0.73% 71.64% 182ms 1.24% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 107ms 0.73% 72.37% 181ms 1.23% top12 (inline) 8ms 0.054% 72.42% 175ms 1.19% ompi_datatype_create 8ms 0.054% 72.48% 170ms 1.15% MPI_Type_free 170ms 1.15% 73.63% 170ms 1.15% [libchaste_heart.so] 9ms 0.061% 73.69% 170ms 1.15% ompi_datatype_destroy 28ms 0.19% 73.88% 165ms 1.12% __GI___libc_free 0 0% 73.88% 163ms 1.11% KSP_PCApply 162ms 1.10% 74.98% 162ms 1.10% ddot_ 5ms 0.034% 75.02% 153ms 1.04% ompi_info_register_framework_params 153ms 1.04% 76.06% 153ms 1.04% std::isinf (inline) 35ms 0.24% 76.29% 152ms 1.03% AbstractCardiacCell::SetVoltage (partial-inline) 124ms 0.84% 77.14% 152ms 1.03% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 17ms 0.12% 77.25% 152ms 1.03% H5VM_chunk_index 33ms 0.22% 77.48% 152ms 1.03% ompi_datatype_release_args 111ms 0.75% 78.23% 144ms 0.98% AbstractOneStepIvpOdeSolver::Solve 142ms 0.96% 79.19% 142ms 0.96% TimeStepper::CalculateNextTime 2ms 0.014% 79.21% 137ms 0.93% Hdf5DataWriter::PutUnlimitedVariable 59ms 0.4% 79.61% 136ms 0.92% _int_free 12ms 0.082% 79.69% 121ms 0.82% H5S_set_version 0 0% 79.69% 119ms 0.81% PMPI_File_set_view 5ms 0.034% 79.72% 119ms 0.81% VecNorm 0 0% 79.72% 115ms 0.78% VecDuplicate 3ms 0.02% 79.74% 115ms 0.78% VecDuplicate_MPI 53ms 0.36% 80.10% 109ms 0.74% H5VM_array_calc 2ms 0.014% 80.12% 107ms 0.73% PMPI_Type_create_resized 107ms 0.73% 80.84% 107ms 0.73% __ieee754_log_fma 0 0% 80.84% 106ms 0.72% VecNorm_Seq 40ms 0.27% 81.12% 105ms 0.71% std::__cxx11::basic_string::basic_string 1ms 0.0068% 81.12% 103ms 0.7% ompi_datatype_duplicate 48ms 0.33% 81.45% 100ms 0.68% H5S_hyper_add_span_element 0 0% 81.45% 96ms 0.65% VecTDot 85ms 0.58% 82.03% 93ms 0.63% AbstractParameterisedSystem::SetAnyVariable 0 0% 82.03% 93ms 0.63% VecTDot_Seq 0 0% 82.03% 93ms 0.63% VecXDot_Seq_Private.constprop.0 91ms 0.62% 82.65% 91ms 0.62% __memcpy_avx_unaligned_erms 24ms 0.16% 82.81% 89ms 0.6% __libc_calloc 48ms 0.33% 83.13% 88ms 0.6% AbstractCardiacCell::GetVoltage (partial-inline) 82ms 0.56% 83.69% 82ms 0.56% asuint64 (inline) 63ms 0.43% 84.12% 79ms 0.54% AbstractParameterisedSystem::GetAnyVariable 45ms 0.31% 84.42% 79ms 0.54% TimeStepper::AdvanceOneTimeStep 2ms 0.014% 84.44% 79ms 0.54% opal_datatype_create_desc 3ms 0.02% 84.46% 75ms 0.51% VecCreate 75ms 0.51% 84.97% 75ms 0.51% [libm.so.6] 12ms 0.082% 85.05% 74ms 0.5% std::vector::_M_assign_aux (inline) 0 0% 85.05% 74ms 0.5% std::vector::assign (inline)