File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3618ms, 88.07% of 4108ms total Dropped 477 nodes (cum <= 20.54ms) flat flat% sum% cum cum% 0 0% 0% 4100ms 99.81% __libc_start_call_main 0 0% 0% 4100ms 99.81% __libc_start_main_impl 0 0% 0% 4100ms 99.81% _start 0 0% 0% 4097ms 99.73% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4097ms 99.73% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4097ms 99.73% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4097ms 99.73% main 0 0% 0% 4061ms 98.86% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4061ms 98.86% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4061ms 98.86% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 4ms 0.097% 0.097% 4053ms 98.66% AbstractCardiacProblem::Solve 0 0% 0.097% 4042ms 98.39% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.097% 2068ms 50.34% LinearSystem::Solve 0 0% 0.097% 2023ms 49.25% KSPSolve 5ms 0.12% 0.22% 2023ms 49.25% KSPSolve_Private 2ms 0.049% 0.27% 1993ms 48.52% KSPSolve_CG 9ms 0.22% 0.49% 1665ms 40.53% AbstractCardiacTissue::SolveCellSystems 5ms 0.12% 0.61% 1318ms 32.08% PCApply 1ms 0.024% 0.63% 1301ms 31.67% PCApply_BJacobi_Singleblock 56ms 1.36% 2.00% 1100ms 26.78% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 2.00% 1074ms 26.14% KSPSolve_PREONLY (partial-inline) 0 0% 2.00% 1046ms 25.46% KSP_PCApply.lto_priv.7 1ms 0.024% 2.02% 1000ms 24.34% PCApply_ICC 7ms 0.17% 2.19% 999ms 24.32% MatSolve 974ms 23.71% 25.90% 984ms 23.95% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 208ms 5.06% 30.96% 980ms 23.86% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 5ms 0.12% 31.09% 529ms 12.88% MatMult 23ms 0.56% 31.65% 522ms 12.71% AbstractCardiacTissue::UpdateCaches (inline) 5ms 0.12% 31.77% 518ms 12.61% MatMult_SeqAIJ (partial-inline) 511ms 12.44% 44.21% 518ms 12.61% MatMult_SeqAIJ_Inode (inline) 133ms 3.24% 47.44% 486ms 11.83% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 57ms 1.39% 48.83% 424ms 10.32% CardiacNewtonSolver::Solve 0 0% 48.83% 383ms 9.32% KSP_PCApply (partial-inline) 1ms 0.024% 48.86% 377ms 9.18% KSPConvergedDefault 54ms 1.31% 50.17% 269ms 6.55% BidomainSolver::SetupLinearSystem 138ms 3.36% 53.53% 242ms 5.89% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 42ms 1.02% 54.55% 238ms 5.79% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 22ms 0.54% 55.09% 227ms 5.53% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 55.09% 204ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 43ms 1.05% 56.13% 204ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 188ms 4.58% 60.71% 188ms 4.58% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 1ms 0.024% 60.74% 181ms 4.41% MatNullSpaceRemove 3ms 0.073% 60.81% 172ms 4.19% std::pow (inline) 27ms 0.66% 61.47% 168ms 4.09% __pow 13ms 0.32% 61.78% 140ms 3.41% __ieee754_pow_fma 2ms 0.049% 61.83% 124ms 3.02% VecDuplicate 121ms 2.95% 64.78% 123ms 2.99% __ieee754_log_fma 63ms 1.53% 66.31% 122ms 2.97% __GI___exp 0 0% 66.31% 114ms 2.78% boost::numeric::ublas::norm_inf (inline) 68ms 1.66% 67.96% 114ms 2.78% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 67.96% 114ms 2.78% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 67.96% 114ms 2.78% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 113ms 2.75% 70.72% 113ms 2.75% ddot_ 0 0% 70.72% 109ms 2.65% VecMDot 11ms 0.27% 70.98% 109ms 2.65% VecMXDot_Private 88ms 2.14% 73.13% 91ms 2.22% exp_inline (inline) 4ms 0.097% 73.22% 90ms 2.19% VecTDot 21ms 0.51% 73.73% 80ms 1.95% MPI_Wtime 0 0% 73.73% 75ms 1.83% VecTDot_Seq 0 0% 73.73% 75ms 1.83% VecXDot_Seq_Private.constprop.0 69ms 1.68% 75.41% 72ms 1.75% VecMDot_Seq 6ms 0.15% 75.56% 71ms 1.73% VecMAXPY 14ms 0.34% 75.90% 69ms 1.68% PetscLogEventBeginDefault 0 0% 75.90% 68ms 1.66% VecDuplicate_Seq 32ms 0.78% 76.68% 63ms 1.53% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2ms 0.049% 76.73% 60ms 1.46% VecDestroy 0 0% 76.73% 59ms 1.44% VecNorm 59ms 1.44% 78.16% 59ms 1.44% [[vdso]] 0 0% 78.16% 59ms 1.44% __GI___clock_gettime 54ms 1.31% 79.48% 58ms 1.41% __ieee754_exp_fma 8ms 0.19% 79.67% 57ms 1.39% PetscMallocA 3ms 0.073% 79.75% 54ms 1.31% VecDuplicate_MPI 9ms 0.22% 79.97% 53ms 1.29% PetscLogEventEndDefault 4ms 0.097% 80.06% 51ms 1.24% VecCreate 3ms 0.073% 80.14% 49ms 1.19% PetscMallocAlign (partial-inline) 0 0% 80.14% 48ms 1.17% VecNorm_Seq 0 0% 80.14% 45ms 1.10% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 80.14% 45ms 1.10% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 80.14% 45ms 1.10% boost_numeric_ublas_abs (inline) 45ms 1.10% 81.23% 45ms 1.10% std::abs (inline) 41ms 1% 82.23% 44ms 1.07% VecMAXPY_Seq 38ms 0.93% 83.15% 38ms 0.93% [libchaste_heart.so] 7ms 0.17% 83.33% 37ms 0.9% VecCopy 10ms 0.24% 83.57% 35ms 0.85% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 83.57% 35ms 0.85% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.049% 83.62% 33ms 0.8% VecSetType 33ms 0.8% 84.42% 33ms 0.8% log_inline (inline) 32ms 0.78% 85.20% 32ms 0.78% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.20% 32ms 0.78% CxxTest::RealWorldDescription::setUp 0 0% 85.20% 32ms 0.78% PMPI_Init_thread 4ms 0.097% 85.30% 32ms 0.78% PetscHeaderDestroy_Private 0 0% 85.30% 32ms 0.78% PetscInitialize 0 0% 85.30% 32ms 0.78% PetscSetup::setUpWorld 0 0% 85.30% 32ms 0.78% PetscSetupUtils::CommonSetup 0 0% 85.30% 32ms 0.78% PetscSetupUtils::InitialisePetsc 1ms 0.024% 85.32% 32ms 0.78% VecCreate_MPI_Private 0 0% 85.32% 32ms 0.78% ompi_mpi_init 0 0% 85.32% 31ms 0.75% PetscMemcpy (inline) 0 0% 85.32% 30ms 0.73% PetscMemzero (inline) 30ms 0.73% 86.05% 30ms 0.73% __memcpy_avx_unaligned_erms 30ms 0.73% 86.78% 30ms 0.73% __memset_avx2_unaligned_erms 9ms 0.22% 87.00% 28ms 0.68% PetscOptionsFindPair 1ms 0.024% 87.03% 25ms 0.61% 25ms 0.61% 87.63% 25ms 0.61% DistributedVector::Iterator::operator!= 1ms 0.024% 87.66% 25ms 0.61% VecCreate_Seq 7ms 0.17% 87.83% 25ms 0.61% __GI___libc_malloc 5ms 0.12% 87.95% 23ms 0.56% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 0 0% 87.95% 23ms 0.56% __posix_memalign 0 0% 87.95% 22ms 0.54% KSP_RemoveNullSpace (inline) 0 0% 87.95% 22ms 0.54% VecCopy_Seq (partial-inline) 0 0% 87.95% 22ms 0.54% orte_init 0 0% 87.95% 21ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 3ms 0.073% 88.02% 21ms 0.51% PMPI_Comm_get_attr 1ms 0.024% 88.05% 21ms 0.51% VecAYPX 1ms 0.024% 88.07% 21ms 0.51% VecStashCreate_Private